Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000109A_C01 KMC000109A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16490.1| P0665D10.15 [Oryza sativa (japonica cultivar-gro... 65 5e-10
ref|NP_564944.1| bHLH protein; protein id: At1g68810.1, supporte... 54 1e-06
ref|NP_191236.1| bHLH protein; protein id: At3g56770.1 [Arabidop... 48 1e-04
ref|NP_181549.1| hypothetical protein; protein id: At2g40200.1, ... 40 0.030
ref|NP_189199.1| bHLH protein; protein id: At3g25710.1, supporte... 37 0.15
>dbj|BAB16490.1| P0665D10.15 [Oryza sativa (japonica cultivar-group)]
gi|21327944|dbj|BAC00537.1| P0489G09.4 [Oryza sativa
(japonica cultivar-group)]
Length = 267
Score = 65.5 bits (158), Expect = 5e-10
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Frame = -1
Query: 569 ATVCSDYQSEILSDLKQTLDALQLQLVKAELSTLGERMKNVFVFTCCXRENVNIEACQAL 390
AT+ D ++++ D+K+ L L L++V +E++TLG R++ F+ +C R A A
Sbjct: 166 ATLSCDDRADLFVDVKRALQPLGLEVVGSEVTTLGGRVRLAFLVSCGSRGG----AAAAA 221
Query: 389 ASNVHQALGSVLEKASNALEFSFRASD--RCKRRRLSFIESSSSS 261
++V AL SVL+KAS+ +F+ RA+ KRR++S ESSSSS
Sbjct: 222 MASVRHALQSVLDKASSGFDFAPRAASLLGSKRRKVSTFESSSSS 266
>ref|NP_564944.1| bHLH protein; protein id: At1g68810.1, supported by cDNA:
gi_18176097 [Arabidopsis thaliana]
gi|25404781|pir||H96712 probable DNA-binding protein
T6L1.1 [imported] - Arabidopsis thaliana
gi|12323209|gb|AAG51581.1|AC011665_2 putative
DNA-binding protein [Arabidopsis thaliana]
gi|12324140|gb|AAG52041.1|AC011914_11 putative
DNA-binding protein; 36199-34606 [Arabidopsis thaliana]
gi|18176098|gb|AAL59983.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|21689745|gb|AAM67516.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 368
Score = 54.3 bits (129), Expect = 1e-06
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = -1
Query: 569 ATVCSDYQSEILSDLKQTLDALQLQLVKAELSTLGERMKNVFVFTC--CXRENVNIEACQ 396
A++C + +S++L D+ +TL A++L+ +KAE++T+G R+KNV T E V E C
Sbjct: 261 ASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRVKNVLFVTGEESSGEEVEEEYC- 319
Query: 395 ALASNVHQALGSVLEKASNALEFSFRASDRCKRRRLS 285
+ +AL +V+EK SN E S +S KR+R+S
Sbjct: 320 --IGTIEEALKAVMEK-SNVEESS--SSGNAKRQRMS 351
>ref|NP_191236.1| bHLH protein; protein id: At3g56770.1 [Arabidopsis thaliana]
gi|11292134|pir||T51265 probable HLH DNA binding protein
- Arabidopsis thaliana gi|9662996|emb|CAC00740.1|
putative HLH DNA binding protein [Arabidopsis thaliana]
Length = 230
Score = 47.8 bits (112), Expect = 1e-04
Identities = 30/104 (28%), Positives = 58/104 (54%), Gaps = 3/104 (2%)
Frame = -1
Query: 593 ENESISYMATVCSDYQSEILSDLKQTLDALQLQLVKAELSTLGERMKNVFVFTCCXRENV 414
++ I + + C + + E+L DL +TL +LQ++ + A+++T+G R +NV V +E+
Sbjct: 124 DDRRIIFKVSFCCEDRPELLKDLMETLKSLQMETLFADMTTVGGRTRNVLV-VAADKEHH 182
Query: 413 NIEACQALASNVHQALGSVLEKASNALEFSF---RASDRCKRRR 291
+++ L AL S+LE++S ++ +R KRRR
Sbjct: 183 GVQSVNFL----QNALKSLLERSSKSVMVGHGGGGGEERLKRRR 222
>ref|NP_181549.1| hypothetical protein; protein id: At2g40200.1, supported by cDNA:
gi_20127046 [Arabidopsis thaliana]
gi|25408672|pir||E84826 hypothetical protein At2g40200
[imported] - Arabidopsis thaliana
gi|4587994|gb|AAD25935.1|AF085279_8 hypothetical protein
[Arabidopsis thaliana]
gi|20127047|gb|AAM10943.1|AF488586_1 putative bHLH
transcription factor [Arabidopsis thaliana]
Length = 254
Score = 39.7 bits (91), Expect = 0.030
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = -1
Query: 584 SISYMATVCSDYQSEILSDLKQTLDALQLQLVKAELSTLGERMKNVFVF---TCCXRENV 414
+I + A+ C + Q E +S++ + L LQL+ ++AE+ ++G RM+ F+ C E
Sbjct: 147 TIIFKASFCCEDQPEAISEIIRVLTKLQLETIQAEIISVGGRMRINFILKDSNC--NETT 204
Query: 413 NIEACQALASNVHQALGSVLEK-ASNALEFSFRASDRCKRRR 291
NI A A + Q+L S L + S++ S R KR+R
Sbjct: 205 NIAAS---AKALKQSLCSALNRITSSSTTTSSVCRIRSKRQR 243
>ref|NP_189199.1| bHLH protein; protein id: At3g25710.1, supported by cDNA: 247881.,
supported by cDNA: gi_16604443, supported by cDNA:
gi_18958019 [Arabidopsis thaliana]
gi|7939557|dbj|BAA95758.1| DNA-binding protein-like
[Arabidopsis thaliana] gi|16604444|gb|AAL24228.1|
AT3g25710/K13N2_1 [Arabidopsis thaliana]
gi|18958020|gb|AAL79583.1| AT3g25710/K13N2_1
[Arabidopsis thaliana] gi|21592500|gb|AAM64450.1|
putative HLH DNA-binding protein [Arabidopsis thaliana]
Length = 344
Score = 37.4 bits (85), Expect = 0.15
Identities = 15/50 (30%), Positives = 34/50 (68%)
Frame = -1
Query: 596 EENESISYMATVCSDYQSEILSDLKQTLDALQLQLVKAELSTLGERMKNV 447
+E ++ A+ C +++++ D+ L +L+L+ +KAE++T+G R+KN+
Sbjct: 208 DEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNI 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,015,822
Number of Sequences: 1393205
Number of extensions: 9118869
Number of successful extensions: 23193
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23149
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
