Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000108A_C01 KMC000108A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172940.1| unknown protein; protein id: At1g14870.1, suppo... 150 1e-35
gb|AAF74286.1|AF261774_1 ORFX [Lycopersicon esculentum] gi|27413... 141 7e-33
gb|AAF74287.1|AF261775_1 ORFX [Lycopersicon pennellii] 141 7e-33
gb|AAO12196.1| fw2.2 [Lycopersicon pennellii] 140 1e-32
gb|AAO12190.1| fw2.2 [Lycopersicon pimpinellifolium] gi|27414007... 140 1e-32
>ref|NP_172940.1| unknown protein; protein id: At1g14870.1, supported by cDNA:
gi_18252924 [Arabidopsis thaliana]
gi|8778226|gb|AAF79235.1|AC006917_20 F10B6.27
[Arabidopsis thaliana] gi|18252925|gb|AAL62389.1|
unknown protein [Arabidopsis thaliana]
gi|21389643|gb|AAM48020.1| unknown protein [Arabidopsis
thaliana]
Length = 152
Score = 150 bits (379), Expect = 1e-35
Identities = 73/184 (39%), Positives = 98/184 (52%), Gaps = 6/184 (3%)
Frame = +3
Query: 90 PQPPVEWSTGLCDCFSDYDNCCLTYWCPCVTFGRIAEIVDKGSASCGASGFYFVQL---- 257
P EWSTG CDCFSD NCC+T+WCPC+TFG++AEIVD+GS SCG +G + +
Sbjct: 10 PHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVT 69
Query: 258 --GGLYSANYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEKQGFNMKINVYLI 431
+YS YR K+R+QYN+KG++C DCL H C C+L Q+YREL+ +G++M
Sbjct: 70 GCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMS------ 123
Query: 432 LISSFFLRIIN*CLEDR*ILIINIIFFLLNLID**IGWHGNVEQQTRGVAMTSTAPTVEQ 611
+GW GNVE+Q + AP +
Sbjct: 124 -----------------------------------LGWAGNVERQQNQGGVAMGAPVFQG 148
Query: 612 GMTR 623
GMTR
Sbjct: 149 GMTR 152
>gb|AAF74286.1|AF261774_1 ORFX [Lycopersicon esculentum] gi|27413995|gb|AAO12185.1| fw2.2
[Lycopersicon esculentum] gi|27413997|gb|AAO12186.1|
fw2.2 [Lycopersicon esculentum]
gi|27413999|gb|AAO12187.1| fw2.2 [Lycopersicon
esculentum] gi|27414001|gb|AAO12188.1| fw2.2
[Lycopersicon esculentum]
Length = 163
Score = 141 bits (356), Expect = 7e-33
Identities = 82/208 (39%), Positives = 105/208 (50%), Gaps = 12/208 (5%)
Frame = +3
Query: 36 MYKTVAGSTDC--QPTPPP-----PPQPPVEWSTGLCDCFSDYDNCCLTYWCPCVTFGRI 194
MY+TV + QP PP P WSTGLC CF D NC +T CPC+TFG+I
Sbjct: 1 MYQTVGYNPGPMKQPYVPPHYVSAPGTTTARWSTGLCHCFDDPANCLVTSVCPCITFGQI 60
Query: 195 AEIVDKGSASCGASGFYFVQLG-----GLYSANYRTKIRSQYNLKGNNCLDCLTHCFCSR 359
+EI++KG+ SCG+ G + LG LYS YR+K+R QY+L+ C+DCL H FC
Sbjct: 61 SEILNKGTTSCGSRGALYCLLGLTGLPSLYSCFYRSKMRGQYDLEEAPCVDCLVHVFCEP 120
Query: 360 CALCQEYRELEKQGFNMKINVYLILISSFFLRIIN*CLEDR*ILIINIIFFLLNLID**I 539
CALCQEYREL+ +GF+M I
Sbjct: 121 CALCQEYRELKNRGFDMG-----------------------------------------I 139
Query: 540 GWHGNVEQQTRGVAMTSTAPTVEQGMTR 623
GW N+++Q+RGV M P GMTR
Sbjct: 140 GWQANMDRQSRGVTM----PPYHAGMTR 163
>gb|AAF74287.1|AF261775_1 ORFX [Lycopersicon pennellii]
Length = 163
Score = 141 bits (356), Expect = 7e-33
Identities = 82/208 (39%), Positives = 104/208 (49%), Gaps = 12/208 (5%)
Frame = +3
Query: 36 MYKTVAGSTDC--QPTPPP-----PPQPPVEWSTGLCDCFSDYDNCCLTYWCPCVTFGRI 194
MY TV + QP PP P WSTGLC CF D NC +T CPC+TFG+I
Sbjct: 1 MYPTVGYNLGLMKQPYVPPHYVSAPGTTTARWSTGLCHCFDDPANCLVTSVCPCITFGQI 60
Query: 195 AEIVDKGSASCGASGFYFVQLG-----GLYSANYRTKIRSQYNLKGNNCLDCLTHCFCSR 359
+EI++KG+ SCG+ G + LG LYS YR+K+R QY+L+ C+DCL H FC
Sbjct: 61 SEILNKGTTSCGSRGALYCLLGLTGLPSLYSCFYRSKMRGQYDLEEAPCVDCLVHVFCEP 120
Query: 360 CALCQEYRELEKQGFNMKINVYLILISSFFLRIIN*CLEDR*ILIINIIFFLLNLID**I 539
CALCQEYREL+ +GF+M I
Sbjct: 121 CALCQEYRELKNRGFDMG-----------------------------------------I 139
Query: 540 GWHGNVEQQTRGVAMTSTAPTVEQGMTR 623
GW N+++Q+RGV M P GMTR
Sbjct: 140 GWQANMDRQSRGVTM----PPYHAGMTR 163
>gb|AAO12196.1| fw2.2 [Lycopersicon pennellii]
Length = 163
Score = 140 bits (354), Expect = 1e-32
Identities = 78/195 (40%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Frame = +3
Query: 69 QPTPPP-----PPQPPVEWSTGLCDCFSDYDNCCLTYWCPCVTFGRIAEIVDKGSASCGA 233
QP PP P WSTGLC CF D NC +T CPC+TFG+I+EI++KG+ SCG+
Sbjct: 14 QPYVPPHYVSAPGTTTARWSTGLCHCFDDPANCLVTSVCPCITFGQISEILNKGTTSCGS 73
Query: 234 SGFYFVQLG-----GLYSANYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEKQ 398
G + LG LYS YR+K+R QY+L+ C+DCL H FC CALCQEYREL+ +
Sbjct: 74 RGALYCLLGLTGLPSLYSCFYRSKMRGQYDLEEAPCVDCLVHVFCEPCALCQEYRELKNR 133
Query: 399 GFNMKINVYLILISSFFLRIIN*CLEDR*ILIINIIFFLLNLID**IGWHGNVEQQTRGV 578
GF+M IGW N+++Q+RGV
Sbjct: 134 GFDMG-----------------------------------------IGWQANMDRQSRGV 152
Query: 579 AMTSTAPTVEQGMTR 623
M P GMTR
Sbjct: 153 TM----PPYHAGMTR 163
>gb|AAO12190.1| fw2.2 [Lycopersicon pimpinellifolium] gi|27414007|gb|AAO12191.1|
fw2.2 [Lycopersicon pimpinellifolium]
gi|27414009|gb|AAO12192.1| fw2.2 [Lycopersicon
pimpinellifolium] gi|27414011|gb|AAO12193.1| fw2.2
[Lycopersicon parviflorum] gi|27414013|gb|AAO12194.1|
fw2.2 [Lycopersicon peruvianum]
gi|27414015|gb|AAO12195.1| fw2.2 [Lycopersicon hirsutum]
Length = 163
Score = 140 bits (354), Expect = 1e-32
Identities = 78/195 (40%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Frame = +3
Query: 69 QPTPPP-----PPQPPVEWSTGLCDCFSDYDNCCLTYWCPCVTFGRIAEIVDKGSASCGA 233
QP PP P WSTGLC CF D NC +T CPC+TFG+I+EI++KG+ SCG+
Sbjct: 14 QPYVPPHYVSAPGTTTARWSTGLCHCFDDPANCLVTSVCPCITFGQISEILNKGTTSCGS 73
Query: 234 SGFYFVQLG-----GLYSANYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEKQ 398
G + LG LYS YR+K+R QY+L+ C+DCL H FC CALCQEYREL+ +
Sbjct: 74 RGALYCLLGLTGLPSLYSCFYRSKMRGQYDLEEAPCVDCLVHVFCEPCALCQEYRELKNR 133
Query: 399 GFNMKINVYLILISSFFLRIIN*CLEDR*ILIINIIFFLLNLID**IGWHGNVEQQTRGV 578
GF+M IGW N+++Q+RGV
Sbjct: 134 GFDMG-----------------------------------------IGWQANMDRQSRGV 152
Query: 579 AMTSTAPTVEQGMTR 623
M P GMTR
Sbjct: 153 TM----PPYHAGMTR 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,808,553
Number of Sequences: 1393205
Number of extensions: 12111657
Number of successful extensions: 86934
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 50005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75960
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
