Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000104A_C01 KMC000104A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC53939.1| MCM protein-like protein [Nicotiana tabacum] 172 3e-42
emb|CAA69609.1| MCM2-related protein [Arabidopsis thaliana] 160 9e-39
ref|NP_175112.1| transcription factor, putative; protein id: At1... 160 9e-39
pir||E96508 hypothetical protein T12C22.19 [imported] - Arabidop... 160 9e-39
gb|AAF69149.1|AC007915_1 F27F5.1 [Arabidopsis thaliana] 107 1e-22
>dbj|BAC53939.1| MCM protein-like protein [Nicotiana tabacum]
Length = 865
Score = 172 bits (436), Expect = 3e-42
Identities = 84/123 (68%), Positives = 105/123 (85%)
Frame = -3
Query: 602 HLSKHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNELLHYLLRELV 423
HL +HVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSF+KY+T+KKD+N ++ +LLR LV
Sbjct: 737 HLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFKKYMTYKKDFNAIILHLLRGLV 796
Query: 422 KNALHFEEIVSGSASGLTHVDVKLDDLVNKAQDHEIYDLKPFFSSSLFSSGNFALDEERG 243
+A+ FEEIVSGS + L H+D+K+D+L +KA D+ I DLK FF+S+ FS NF LD+ERG
Sbjct: 797 NDAMQFEEIVSGSTANLDHIDIKVDELQSKALDYGITDLKAFFTSNDFSKANFELDKERG 856
Query: 242 VIR 234
+IR
Sbjct: 857 IIR 859
>emb|CAA69609.1| MCM2-related protein [Arabidopsis thaliana]
Length = 491
Score = 160 bits (406), Expect = 9e-39
Identities = 78/123 (63%), Positives = 105/123 (84%)
Frame = -3
Query: 602 HLSKHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNELLHYLLRELV 423
HL ++VT+EDV+MAIRVLLDSFISTQKFGVQ+ L++SF++YIT+KKD+N LL LL+ELV
Sbjct: 361 HLRQYVTEEDVNMAIRVLLDSFISTQKFGVQRTLRESFKRYITYKKDFNSLLLVLLKELV 420
Query: 422 KNALHFEEIVSGSASGLTHVDVKLDDLVNKAQDHEIYDLKPFFSSSLFSSGNFALDEERG 243
KNAL FEEI+SGS SGL ++VK+++L KA++++I DL+PFFSS+ FS +F LD RG
Sbjct: 421 KNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKAHFELDHGRG 480
Query: 242 VIR 234
+I+
Sbjct: 481 MIK 483
>ref|NP_175112.1| transcription factor, putative; protein id: At1g44900.1 [Arabidopsis
thaliana]
Length = 928
Score = 160 bits (406), Expect = 9e-39
Identities = 78/123 (63%), Positives = 105/123 (84%)
Frame = -3
Query: 602 HLSKHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNELLHYLLRELV 423
HL ++VT+EDV+MAIRVLLDSFISTQKFGVQ+ L++SF++YIT+KKD+N LL LL+ELV
Sbjct: 798 HLRQYVTEEDVNMAIRVLLDSFISTQKFGVQRTLRESFKRYITYKKDFNSLLLVLLKELV 857
Query: 422 KNALHFEEIVSGSASGLTHVDVKLDDLVNKAQDHEIYDLKPFFSSSLFSSGNFALDEERG 243
KNAL FEEI+SGS SGL ++VK+++L KA++++I DL+PFFSS+ FS +F LD RG
Sbjct: 858 KNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKAHFELDHGRG 917
Query: 242 VIR 234
+I+
Sbjct: 918 MIK 920
>pir||E96508 hypothetical protein T12C22.19 [imported] - Arabidopsis thaliana
gi|8656002|gb|AAF78275.1|AC020576_19 Contains similarity
to a MCM2-related protein from Arabidopsis thaliana
gb|Y08301 and contains a MCM PF|00493 domain
Length = 936
Score = 160 bits (406), Expect = 9e-39
Identities = 78/123 (63%), Positives = 105/123 (84%)
Frame = -3
Query: 602 HLSKHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYITFKKDYNELLHYLLRELV 423
HL ++VT+EDV+MAIRVLLDSFISTQKFGVQ+ L++SF++YIT+KKD+N LL LL+ELV
Sbjct: 806 HLRQYVTEEDVNMAIRVLLDSFISTQKFGVQRTLRESFKRYITYKKDFNSLLLVLLKELV 865
Query: 422 KNALHFEEIVSGSASGLTHVDVKLDDLVNKAQDHEIYDLKPFFSSSLFSSGNFALDEERG 243
KNAL FEEI+SGS SGL ++VK+++L KA++++I DL+PFFSS+ FS +F LD RG
Sbjct: 866 KNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKAHFELDHGRG 925
Query: 242 VIR 234
+I+
Sbjct: 926 MIK 928
>gb|AAF69149.1|AC007915_1 F27F5.1 [Arabidopsis thaliana]
Length = 95
Score = 107 bits (267), Expect = 1e-22
Identities = 51/87 (58%), Positives = 71/87 (80%)
Frame = -3
Query: 494 SFRKYITFKKDYNELLHYLLRELVKNALHFEEIVSGSASGLTHVDVKLDDLVNKAQDHEI 315
SF++YIT+KKD+N LL LL+ELVKNAL FEEI+SGS SGL ++VK+++L KA++++I
Sbjct: 1 SFKRYITYKKDFNSLLLVLLKELVKNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYDI 60
Query: 314 YDLKPFFSSSLFSSGNFALDEERGVIR 234
DL+PFFSS+ FS +F LD RG+I+
Sbjct: 61 ADLRPFFSSTDFSKAHFELDHGRGMIK 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,214,110
Number of Sequences: 1393205
Number of extensions: 9112336
Number of successful extensions: 23395
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 22394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23366
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
