Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000103A_C01 KMC000103A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P93231|VP41_LYCES Vacuolar assembly protein VPS41 homolog gi|... 154 8e-37
gb|AAB60858.1| aVps41p [Arabidopsis thaliana] 123 1e-27
ref|NP_172297.1| vacuolar assembly protein vps41, putative; prot... 123 2e-27
sp|P93043|VP41_ARATH Vacuolar assembly protein VPS41 homolog 123 2e-27
sp|Q90972|RN13_CHICK RING finger protein 13 (C-RZF) gi|1321818|e... 39 0.051
>sp|P93231|VP41_LYCES Vacuolar assembly protein VPS41 homolog gi|7489080|pir||T07680 VPS41
protein homolog - tomato gi|1835788|gb|AAB60857.1| VPS41
[Lycopersicon esculentum]
Length = 960
Score = 154 bits (388), Expect = 8e-37
Identities = 74/147 (50%), Positives = 96/147 (64%), Gaps = 7/147 (4%)
Frame = -3
Query: 533 LIKYHKEARHGISLGNEEDEPRIKMSSTHAFQVSDKSPSLRIMEVKSKTRGGGRCCICFD 354
L+KY+KEA+ G+ L +E D+ + + +++ SL+ +EVKSKTRGGGRCCICFD
Sbjct: 814 LVKYYKEAKRGVCLSDEVDDVSSRRGEKSVSHLGERTMSLKSVEVKSKTRGGGRCCICFD 873
Query: 353 PFQIQSVSVIVFFCCHGYHTTCLTDSSYTISTKKAIEVTSQEAETYDSY-NGYVDDASDD 177
PF I +VS+I FFCCH YHTTCL +SS ++ KK V +Q +YD Y NG DD D+
Sbjct: 874 PFSILNVSIIAFFCCHAYHTTCLMESSISVGGKKEAGVAAQRTTSYDEYPNGVNDDYEDE 933
Query: 176 DNE------ANSGCPRLRCILCTTATG 114
D E A SG +RCILCTTA G
Sbjct: 934 DEEEEEEEDATSGALPMRCILCTTAAG 960
>gb|AAB60858.1| aVps41p [Arabidopsis thaliana]
Length = 334
Score = 123 bits (309), Expect = 1e-27
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 12/150 (8%)
Frame = -3
Query: 533 LIKYHKEARHGISLGNEEDEPRIKM-----SSTHAFQVSDKSPSLRIMEVKSKTRGGGRC 369
L+K EAR G+ L +E+D+ R K SS V DKS S+++ EVKSKTRG RC
Sbjct: 182 LVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKSKTRGDTRC 241
Query: 368 CICFDPFQIQSVSVIVFFCCHGYHTTCLTDSSYTISTKKAIEVTSQEAETYDSYNGYVDD 189
C+CFDP I+ +V+VFFCCH YH TCL D++++ + K + +S +YD NG VD+
Sbjct: 242 CMCFDPVSIRGDTVVVFFCCHAYHETCLMDAAFSNNNHKTTKGSSGYEYSYD--NG-VDE 298
Query: 188 ASDDDNEANS-------GCPRLRCILCTTA 120
++D E + G RLRCILCTTA
Sbjct: 299 EEEEDEEEDEDGDGDRPGRSRLRCILCTTA 328
>ref|NP_172297.1| vacuolar assembly protein vps41, putative; protein id: At1g08190.1
[Arabidopsis thaliana]
gi|6579196|gb|AAF18239.1|AC011438_1 T23G18.5 [Arabidopsis
thaliana]
Length = 1000
Score = 123 bits (308), Expect = 2e-27
Identities = 68/149 (45%), Positives = 91/149 (60%), Gaps = 11/149 (7%)
Frame = -3
Query: 533 LIKYHKEARHGISLGNEEDEPRIKM-----SSTHAFQVSDKSPSLRIMEVKSKTRGGGRC 369
L+K EAR G+ L +E+D+ R K SS V DKS S+++ EVKSKTRG RC
Sbjct: 849 LVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKSKTRGDTRC 908
Query: 368 CICFDPFQIQSVSVIVFFCCHGYHTTCLTDSSYTISTKKAIEVTSQEAETYDSYNGYVDD 189
C+CFDP I+ +V+VFFCCH YH TCL D++++ + K + +S +YD NG VD+
Sbjct: 909 CMCFDPVSIRGDTVVVFFCCHAYHETCLMDAAFSNNNHKTTKGSSGYEYSYD--NG-VDE 965
Query: 188 ASDDDNEANS------GCPRLRCILCTTA 120
+D+ E G RLRCILCTTA
Sbjct: 966 EEEDEEEDEDGDGDRPGRSRLRCILCTTA 994
>sp|P93043|VP41_ARATH Vacuolar assembly protein VPS41 homolog
Length = 976
Score = 123 bits (308), Expect = 2e-27
Identities = 68/149 (45%), Positives = 91/149 (60%), Gaps = 11/149 (7%)
Frame = -3
Query: 533 LIKYHKEARHGISLGNEEDEPRIKM-----SSTHAFQVSDKSPSLRIMEVKSKTRGGGRC 369
L+K EAR G+ L +E+D+ R K SS V DKS S+++ EVKSKTRG RC
Sbjct: 825 LVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKSKTRGDTRC 884
Query: 368 CICFDPFQIQSVSVIVFFCCHGYHTTCLTDSSYTISTKKAIEVTSQEAETYDSYNGYVDD 189
C+CFDP I+ +V+VFFCCH YH TCL D++++ + K + +S +YD NG VD+
Sbjct: 885 CMCFDPVSIRGDTVVVFFCCHAYHETCLMDAAFSNNNHKTTKGSSGYEYSYD--NG-VDE 941
Query: 188 ASDDDNEANS------GCPRLRCILCTTA 120
+D+ E G RLRCILCTTA
Sbjct: 942 EEEDEEEDEDGDGDRPGRSRLRCILCTTA 970
>sp|Q90972|RN13_CHICK RING finger protein 13 (C-RZF) gi|1321818|emb|CAA64725.1| RING zinc
finger protein [Gallus gallus] gi|1589724|prf||2211437A
RING finger protein
Length = 381
Score = 38.5 bits (88), Expect = 0.051
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -3
Query: 371 CCICFDPFQIQSVSVIVFFCCHGYHTTCLTDSSYTISTKKAIEVTSQEAETYDSYNGYVD 192
C IC D ++ + + C H YH C+ + TKK V Q+ +
Sbjct: 240 CAICLDEYE-DGDKLRILPCSHAYHCKCV--DPWLTKTKKTCPVCKQKVVPSQGDSDSET 296
Query: 191 DASDDDNEANSGCPRLR 141
D+S ++NE + P LR
Sbjct: 297 DSSQEENEVSENTPLLR 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,425,190
Number of Sequences: 1393205
Number of extensions: 9992152
Number of successful extensions: 39539
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 29221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35590
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
