Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000083A_C01 KMC000083A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P00051|CYC_CUCMA Cytochrome c gi|65496|pir||CCPU cytochrome c... 121 5e-27
sp|P00052|CYC_PHAAU Cytochrome c gi|65497|pir||CCMB cytochrome c... 120 1e-26
sp|P00062|CYC_SAMNI Cytochrome c gi|65507|pir||CCED cytochrome c... 119 2e-26
ref|NP_192742.1| cytochrome c; protein id: At4g10040.1, supporte... 118 3e-26
pir||CCRM cytochrome c - cuckoopint 118 4e-26
>sp|P00051|CYC_CUCMA Cytochrome c gi|65496|pir||CCPU cytochrome c - winter squash
Length = 111
Score = 121 bits (303), Expect = 5e-27
Identities = 57/64 (89%), Positives = 60/64 (93%)
Frame = -3
Query: 500 SGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPQKYIPGTKMVFPGLQKPPDRADLIAYLK 321
SGTTPGYSYSAANKN AVIWEEKTLYDYLLNP+KYIPGTKMVFPGL+KP DRADLIAYLK
Sbjct: 48 SGTTPGYSYSAANKNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 107
Query: 320 PSPA 309
+ A
Sbjct: 108 EATA 111
>sp|P00052|CYC_PHAAU Cytochrome c gi|65497|pir||CCMB cytochrome c - mung bean
Length = 111
Score = 120 bits (300), Expect = 1e-26
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = -3
Query: 500 SGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPQKYIPGTKMVFPGLQKPPDRADLIAYLK 321
SGTT GYSYS ANKNMAVIWEEKTLYDYLLNP+KYIPGTKMVFPGL+KP DRADLIAYLK
Sbjct: 48 SGTTAGYSYSTANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 107
Query: 320 PSPA 309
S A
Sbjct: 108 ESTA 111
>sp|P00062|CYC_SAMNI Cytochrome c gi|65507|pir||CCED cytochrome c - European elder
Length = 111
Score = 119 bits (297), Expect = 2e-26
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = -3
Query: 500 SGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPQKYIPGTKMVFPGLQKPPDRADLIAYLK 321
SGTT GYSYSAANKNMAV WEEKTLYDYLLNP+KYIPGTKMVFPGL+KP DRADLIAYLK
Sbjct: 48 SGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 107
Query: 320 PSPA 309
S A
Sbjct: 108 QSTA 111
>ref|NP_192742.1| cytochrome c; protein id: At4g10040.1, supported by cDNA: 31115.,
supported by cDNA: gi_15028282, supported by cDNA:
gi_19310746 [Arabidopsis thaliana]
gi|27734261|sp|Q9T0G2|CYC3_ARATH Probable cytochrome c
At4g10040 gi|7430458|pir||T04008 cytochrome c -
Arabidopsis thaliana gi|4539007|emb|CAB39628.1|
cytochrome c [Arabidopsis thaliana]
gi|7267700|emb|CAB78127.1| cytochrome c [Arabidopsis
thaliana] gi|15028283|gb|AAK76618.1| putative cytochrome
c protein [Arabidopsis thaliana]
gi|19310747|gb|AAL85104.1| putative cytochrome c protein
[Arabidopsis thaliana] gi|21592668|gb|AAM64617.1|
cytochrome c [Arabidopsis thaliana]
Length = 112
Score = 118 bits (296), Expect = 3e-26
Identities = 56/64 (87%), Positives = 59/64 (91%)
Frame = -3
Query: 500 SGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPQKYIPGTKMVFPGLQKPPDRADLIAYLK 321
SGTTPGYSYSAANK+MAV WEEKTLYDYLLNP+KYIPGTKMVFPGL+KP DRADLIAYLK
Sbjct: 49 SGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
Query: 320 PSPA 309
A
Sbjct: 109 EGTA 112
>pir||CCRM cytochrome c - cuckoopint
Length = 111
Score = 118 bits (295), Expect = 4e-26
Identities = 56/64 (87%), Positives = 59/64 (91%)
Frame = -3
Query: 500 SGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPQKYIPGTKMVFPGLQKPPDRADLIAYLK 321
SGTT GYSYSAANKNMAVIWEE TLYDYLLNP+KYIPGTKMVFPGL+KP +RADLIAYLK
Sbjct: 48 SGTTAGYSYSAANKNMAVIWEESTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLK 107
Query: 320 PSPA 309
S A
Sbjct: 108 ESTA 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,418,239
Number of Sequences: 1393205
Number of extensions: 10186407
Number of successful extensions: 26119
Number of sequences better than 10.0: 331
Number of HSP's better than 10.0 without gapping: 25526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26098
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
