Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000075A_C01 KMC000075A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08412 hypothetical protein F18B3.190 - Arabidopsis thalian... 39 0.064
ref|NP_566941.1| putative protein; protein id: At3g50910.1, supp... 39 0.064
dbj|BAB10924.1| gene_id:K1F13.14~pir||T08412~similar to unknown ... 35 0.93
ref|NP_569035.1| putative protein; protein id: At5g66480.1, supp... 35 0.93
gb|EAA39549.1| GLP_203_44315_41985 [Giardia lamblia ATCC 50803] 34 1.6
>pir||T08412 hypothetical protein F18B3.190 - Arabidopsis thaliana
gi|4835242|emb|CAB42920.1| putative protein [Arabidopsis
thaliana]
Length = 424
Score = 38.5 bits (88), Expect = 0.064
Identities = 21/59 (35%), Positives = 35/59 (58%)
Frame = -1
Query: 407 LPAEESPKWLSINFYFSFSQQVYVARFI*NPIGRGNVRAEIERELEAPL***NFEITFL 231
+P + + ++N Q+ +ARF+ + +GRG +AE+E E+E+ L NFEIT L
Sbjct: 316 VPIDPTASTNNMNLSEELRCQLEIARFVSDSLGRGMAKAEVEMEMESMLETKNFEITRL 374
>ref|NP_566941.1| putative protein; protein id: At3g50910.1, supported by cDNA:
gi_14517539 [Arabidopsis thaliana]
gi|14517540|gb|AAK62660.1| AT3g50910/F18B3_190
[Arabidopsis thaliana] gi|27764930|gb|AAO23586.1|
At3g50910/F18B3_190 [Arabidopsis thaliana]
Length = 447
Score = 38.5 bits (88), Expect = 0.064
Identities = 21/59 (35%), Positives = 35/59 (58%)
Frame = -1
Query: 407 LPAEESPKWLSINFYFSFSQQVYVARFI*NPIGRGNVRAEIERELEAPL***NFEITFL 231
+P + + ++N Q+ +ARF+ + +GRG +AE+E E+E+ L NFEIT L
Sbjct: 316 VPIDPTASTNNMNLSEELRCQLEIARFVSDSLGRGMAKAEVEMEMESMLETKNFEITRL 374
>dbj|BAB10924.1| gene_id:K1F13.14~pir||T08412~similar to unknown protein
[Arabidopsis thaliana]
Length = 394
Score = 34.7 bits (78), Expect = 0.93
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = -1
Query: 407 LPAEESPKWLSINFYFSFSQQVYVARFI*NPIGRGNVRAEIERELEAPL***NFEITFL 231
LP + + S+N Q+ V RF+ + +G + E+E E+EA L NFEIT L
Sbjct: 308 LPLDPTRSQYSMNLADELRCQLEVTRFVSDTLGSDLAKTEVEMEMEAELEAKNFEITRL 366
>ref|NP_569035.1| putative protein; protein id: At5g66480.1, supported by cDNA:
gi_20259142 [Arabidopsis thaliana]
gi|15810313|gb|AAL07044.1| unknown protein [Arabidopsis
thaliana] gi|20259143|gb|AAM14287.1| unknown protein
[Arabidopsis thaliana]
Length = 444
Score = 34.7 bits (78), Expect = 0.93
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = -1
Query: 407 LPAEESPKWLSINFYFSFSQQVYVARFI*NPIGRGNVRAEIERELEAPL***NFEITFL 231
LP + + S+N Q+ V RF+ + +G + E+E E+EA L NFEIT L
Sbjct: 308 LPLDPTRSQYSMNLADELRCQLEVTRFVSDTLGSDLAKTEVEMEMEAELEAKNFEITRL 366
>gb|EAA39549.1| GLP_203_44315_41985 [Giardia lamblia ATCC 50803]
Length = 776
Score = 33.9 bits (76), Expect = 1.6
Identities = 24/92 (26%), Positives = 46/92 (49%), Gaps = 6/92 (6%)
Frame = +2
Query: 35 KQEEISHHETPNILCIELKQQSVQQKAGHAIQRQQIYKPKDCLINEQT------*AHYKI 196
K++EI H LK + ++Q+A A R+Q + ++C+I + T A
Sbjct: 606 KEQEIQH----------LKDELIKQQAESAALREQKFIKQECIIQDLTASLRAATAEIDS 655
Query: 197 LRKKILTVKLFQET*SQNSIIIVELPIPSLSR 292
LR+K+ Q + S +++ +V++P LS+
Sbjct: 656 LRQKVALQSPVQSSLSSSTLTVVKMPSLELSQ 687
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,521,387
Number of Sequences: 1393205
Number of extensions: 8495834
Number of successful extensions: 18407
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18404
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
