Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC010233A_C01 KCC010233A_c01
(440 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P14273|CB2_CHLRE Chlorophyll A-B binding protein of LHCII typ... 72 1e-12
gb|AAD03731.1| light harvesting complex II protein precursor [Ch... 72 1e-12
gb|AAL88457.1|AF479778_1 major light-harvesting complex II prote... 69 1e-11
gb|AAL88458.1|AF479779_1 major light-harvesting complex II prote... 58 3e-08
dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein... 54 5e-07
>sp|P14273|CB2_CHLRE Chlorophyll A-B binding protein of LHCII type I, chloroplast
precursor (CAB) (LHCP) gi|99383|pir||A31392 chlorophyll
a/b-binding protein - Chlamydomonas reinhardtii
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein
gi|20269802|gb|AAM18056.1|AF495472_1 major
light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
Length = 253
Score = 72.4 bits (176), Expect = 1e-12
Identities = 46/73 (63%), Positives = 47/73 (64%)
Frame = +1
Query: 46 SRKALHVTCNATGKKTAANAAAPKSSGC*VLWPQPAAKWLGPYSENC*SPCT*LAEFPG* 225
SRKAL VTC ATGKKTAA AAAPKSSG P AKWLGPYSEN +P EFPG
Sbjct: 7 SRKALQVTCKATGKKTAAKAAAPKSSGVEFYGPN-RAKWLGPYSENA-TPAYLTGEFPGD 64
Query: 226 LRAGTPAGLSC*P 264
T AGLS P
Sbjct: 65 YGWDT-AGLSADP 76
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/120 (40%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Frame = +2
Query: 113 PRALAVEFYGPNLLPSGW-APTLRTADPRVPDWLSSPADYVLGHLPACPADPGDLQAATC 289
P++ VEFYGPN + W P A P Y+ G P GD T
Sbjct: 29 PKSSGVEFYGPNR--AKWLGPYSENATPA----------YLTGEFP------GDYGWDTA 70
Query: 290 ELELDP------RPAGLCCAALCLL------TPELLAKSGTKFWRGLSWFKAGAQIFSDG 433
L DP R L A +L TPELLAKSGTKF + WFKAGAQIFS+G
Sbjct: 71 GLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAV-WFKAGAQIFSEG 129
>gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 72.4 bits (176), Expect = 1e-12
Identities = 47/77 (61%), Positives = 49/77 (63%)
Frame = +1
Query: 34 SLWLSRKALHVTCNATGKKTAANAAAPKSSGC*VLWPQPAAKWLGPYSENC*SPCT*LAE 213
+L SRKAL VTC ATGKKTAA AAAPKSSG P AKWLGPYSEN +P E
Sbjct: 4 ALATSRKALQVTCKATGKKTAAKAAAPKSSGVEFYGPN-RAKWLGPYSENS-TPAYLTGE 61
Query: 214 FPG*LRAGTPAGLSC*P 264
FPG T AGLS P
Sbjct: 62 FPGDYGWDT-AGLSADP 77
Score = 57.4 bits (137), Expect = 4e-08
Identities = 47/109 (43%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Frame = +2
Query: 113 PRALAVEFYGPNLLPSGWAPTLRTADPRVPDWLSS--PADYVLGHLPACPADPGDLQAAT 286
P++ VEFYGPN + W ++ P +L+ P DY ADP +
Sbjct: 30 PKSSGVEFYGPNR--AKWLGPY--SENSTPAYLTGEFPGDYGWD-TAGLSADPETFKRYR 84
Query: 287 CELELDPRPAGLCCAALCLLTPELLAKSGTKFWRGLSWFKAGAQIFSDG 433
ELEL + A CL TPELLAKSGTKF + WFKAGAQIFS+G
Sbjct: 85 -ELELIHARWAMLGALGCL-TPELLAKSGTKFGEAV-WFKAGAQIFSEG 130
>gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
Length = 254
Score = 69.3 bits (168), Expect = 1e-11
Identities = 44/73 (60%), Positives = 46/73 (62%)
Frame = +1
Query: 46 SRKALHVTCNATGKKTAANAAAPKSSGC*VLWPQPAAKWLGPYSENC*SPCT*LAEFPG* 225
SRKAL VTC ATGKKTAA AAAPK +G P AKWLGPYSEN +P EFPG
Sbjct: 8 SRKALQVTCKATGKKTAAKAAAPKGAGIEFYGPN-RAKWLGPYSENS-TPAYLTGEFPGD 65
Query: 226 LRAGTPAGLSC*P 264
T AGLS P
Sbjct: 66 YGWDT-AGLSADP 77
Score = 48.9 bits (115), Expect = 2e-05
Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +2
Query: 113 PRALAVEFYGPNLLPSGWAPTLRTADPRVPDWLSS--PADYVLGHLPACPADPGDLQAAT 286
P+ +EFYGPN + W ++ P +L+ P DY ADP +
Sbjct: 30 PKGAGIEFYGPNR--AKWLGPY--SENSTPAYLTGEFPGDYGWD-TAGLSADPETFKRYR 84
Query: 287 CELEL-DPRPAGLCCAALCLLTPELLAKSGTKFWRGLSWFKAGAQIFSDG 433
ELEL R A L AL ++TPELL K+G +F + WFKAGAQIF +G
Sbjct: 85 -ELELIHARWAML--GALGIVTPELLQKNGVQFGEAV-WFKAGAQIFQEG 130
>gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 57.8 bits (138), Expect = 3e-08
Identities = 51/123 (41%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = +2
Query: 68 PAMRPARRPLPMLPPPRALAVEFYGPNLLPSGW-APTLRTADPRVPDWLSSPADYVLGHL 244
PA R + PPP A +EFYGPN + W P A P P DY
Sbjct: 19 PARRGTGKTAASRPPP-APGIEFYGPNR--AKWLGPYSENATPAYR-LAKFPGDYGWD-T 73
Query: 245 PACPADPGDLQAATCELELDPRPAGLCCAALCLLTPELLAKSGTKFWRGLSWFKAGAQIF 424
ADP + ELEL + A C+ TPELLAKSGT+F + WFKAGAQIF
Sbjct: 74 AGLSADPETFKRYR-ELELIHARWAMLGALGCI-TPELLAKSGTQFGEAV-WFKAGAQIF 130
Query: 425 SDG 433
S+G
Sbjct: 131 SEG 133
>dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii] gi|15430562|dbj|BAB64416.1|
light-harvesting chlorophyll-a/b binding protein
LhcII-1.3 [Chlamydomonas reinhardtii]
Length = 257
Score = 53.9 bits (128), Expect = 5e-07
Identities = 47/120 (39%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Frame = +2
Query: 113 PRALAVEFYGPNLLPSGW-APTLRTADPRVPDWLSSPADYVLGHLPACPADPGDLQAATC 289
P + +EFYGPN + W P A P Y+ G P GD T
Sbjct: 33 PASSGIEFYGPNR--AKWLGPYSENATPA----------YLTGEFP------GDYGWDTA 74
Query: 290 ELELDP------RPAGLCCA------ALCLLTPELLAKSGTKFWRGLSWFKAGAQIFSDG 433
L DP R L A AL +TPELLAKSGT+F + WFKAGAQIFS+G
Sbjct: 75 GLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAV-WFKAGAQIFSEG 133
Score = 53.1 bits (126), Expect = 8e-07
Identities = 40/80 (50%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +1
Query: 34 SLWLSRKALHVTCNATGKKTAANAA---APKSSGC*VLWPQPAAKWLGPYSENC*SPCT* 204
+L SRKAL V+ ATGKK A AP SSG P AKWLGPYSEN +P
Sbjct: 4 ALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPN-RAKWLGPYSENA-TPAYL 61
Query: 205 LAEFPG*LRAGTPAGLSC*P 264
EFPG T AGLS P
Sbjct: 62 TGEFPGDYGWDT-AGLSADP 80
