KCC010048A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC010048A_C01 KCC010048A_c01
CTCAGAAGCACATCCATCTTACATGATAATCGCCTTGGGCATATAGACTAGCGTTTGCTG
CTTACAACATTGCCAAACTCGCGCGCAGGGCCCGGCTCTTGTGCAATCGGTTTCATTACC
TACTTGGTCGCAAATCTGCGCAGCGCAGTCTAAAATCTGCTCAGTAAAAGCGCCGATCGG
CCATTGGTGCGACAAAGCATCGAGAAGCACGCGGCTGGGCCCTAAATGGCTTCGTGGCCG
GCGCCTGCGGATGCCCGGGGAGGCCTAGCCCCGCTGCCCTGGGCCGGCCGGGACCGGATA
CTGCCGCGGCCCAGCCTCGCCCCCGTCCCTCCGAACCAGCGCTGGGGGCGGAGTCGGAAG
CAGTCCGTCCGCAAGGCCAAGTACGCGGCCGCTATGGCGGGGGGTTTCCTAGCTCTGGGG
CTTGCTAAACGTATCATCAACTCGCTTCCCGTCGTGAACCTCGTGACTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC010048A_C01 KCC010048A_c01
         (469 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA92680.1| KIAA1442 protein [Homo sapiens]                        42  0.003
sp|Q9BQW3|COE4_HUMAN Transcription factor COE4 (Early B-cell fac...    42  0.003
emb|CAB82244.1| dJ860F19.1.2 (novel protein similar to olfactory...    41  0.006
ref|XP_044921.4| similar to dJ860F19.1.2 (novel protein similar ...    41  0.006
gb|AAH19106.2| KIAA1442 protein [Homo sapiens]                         41  0.006

>dbj|BAA92680.1| KIAA1442 protein [Homo sapiens]
          Length = 627

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
 Frame = -1

Query: 349 APSAGSE--GRGRGWAAAVSGPGRPRAAGLGLPGHPQ----APATKPF---RAQPRAS 203
           APS GS+  G G G  A + G G P  AGLG+PG P     + AT PF   R +PRA+
Sbjct: 548 APSPGSQQSGYGGGLGAGLGGYGAPGVAGLGVPGSPSFLNGSTATSPFAKERLRPRAA 605

>sp|Q9BQW3|COE4_HUMAN Transcription factor COE4 (Early B-cell factor 4) (EBF-4)
           (Olf-1/EBF-like 4) (OE-4) (O/E-4)
           gi|12831969|emb|CAC29093.1| dJ860F19.1.1 (KIAA1442
           (similar to olfactory neuronal transcription factors
           (COE1, COE2, COE3, EBF3, OLF1)) (isoform 1)) [Homo
           sapiens]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
 Frame = -1

Query: 349 APSAGSE--GRGRGWAAAVSGPGRPRAAGLGLPGHPQ----APATKPF---RAQPRAS 203
           APS GS+  G G G  A + G G P  AGLG+PG P     + AT PF   R +PRA+
Sbjct: 565 APSPGSQQSGYGGGLGAGLGGYGAPGVAGLGVPGSPSFLNGSTATSPFAKERLRPRAA 622

>emb|CAB82244.1| dJ860F19.1.2 (novel protein similar to olfactory neuronal
           transcription factors (COE1, COE2, COE3, EBF3, OLF1)
           (isoform 2)) [Homo sapiens]
          Length = 602

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = -1

Query: 349 APSAGSE--GRGRGWAAAVSGPGRPRAAGLGLPGHPQ----APATKPFRAQP 212
           APS GS+  G G G  A + G G P  AGLG+PG P     + AT PF   P
Sbjct: 465 APSPGSQQSGYGGGLGAGLGGYGAPGVAGLGVPGSPSFLNGSTATSPFAIMP 516

>ref|XP_044921.4| similar to dJ860F19.1.2 (novel protein similar to olfactory
           neuronal transcription factors (COE1, COE2, COE3, EBF3,
           OLF1) (isoform 2)) [Homo sapiens]
          Length = 598

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = -1

Query: 349 APSAGSE--GRGRGWAAAVSGPGRPRAAGLGLPGHPQ----APATKPFRAQP 212
           APS GS+  G G G  A + G G P  AGLG+PG P     + AT PF   P
Sbjct: 461 APSPGSQQSGYGGGLGAGLGGYGAPGVAGLGVPGSPSFLNGSTATSPFAIMP 512

>gb|AAH19106.2| KIAA1442 protein [Homo sapiens]
          Length = 184

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = -1

Query: 349 APSAGSE--GRGRGWAAAVSGPGRPRAAGLGLPGHPQ----APATKPFRAQP 212
           APS GS+  G G G  A + G G P  AGLG+PG P     + AT PF   P
Sbjct: 47  APSPGSQQSGYGGGLGAGLGGYGAPGVAGLGVPGSPSFLNGSTATSPFAIMP 98



EST assemble image


clone accession position
1 MX227d11_r BP090683 1 400
2 MX259h11_r BP092846 157 565




Chlamydomonas reinhardtii
Kazusa DNA Research Institute