Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC010007A_C01 KCC010007A_c01
(483 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_573555.1| genomic screened homeo box 2 [Mus musculus] gi|... 37 0.12
ref|XP_344234.1| similar to genomic screen homeobox protein 2 [R... 37 0.12
gb|AAO67558.1| Gag protein [Drosophila virilis] gi|29290092|gb|A... 36 0.21
gb|AAL30071.1| Maxi-KH type RNA binding protein Sam68 [Gallus ga... 36 0.21
dbj|BAB69901.1| ORF4 [TT virus] 36 0.21
>ref|NP_573555.1| genomic screened homeo box 2 [Mus musculus]
gi|1708055|sp|P31316|GSH2_MOUSE Homeobox protein GSH-2
gi|2143479|pir||I57039 genomic screen homeobox protein 2
- mouse gi|1042009|gb|AAB34947.1| genomic screen
homeobox protein 2 [Mus musculus]
Length = 305
Score = 37.0 bits (84), Expect = 0.12
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = +1
Query: 238 VHQLSLRSGKNGGGRGQPGEEIPCQTIPAARLSGGGLV--CDALPRTRQRVVPTQGQ--- 402
+H +G GG G G A ++GGG+ ALP + + P G
Sbjct: 69 LHSSRPPAGAGGGATGTAG----------AAVAGGGVAGGTGALPLLKSQFSPAPGDAQF 118
Query: 403 --RVENYHHHQHGPHLLHFRHYP 465
RV + HHH H P H H P
Sbjct: 119 CPRVSHAHHHHHPPQHHHHHHQP 141
>ref|XP_344234.1| similar to genomic screen homeobox protein 2 [Rattus norvegicus]
Length = 305
Score = 37.0 bits (84), Expect = 0.12
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = +1
Query: 238 VHQLSLRSGKNGGGRGQPGEEIPCQTIPAARLSGGGLV--CDALPRTRQRVVPTQGQ--- 402
+H +G GG G G A ++GGG+ ALP + + P G
Sbjct: 69 LHSSRPPAGAGGGATGTAG----------AAVAGGGVAGGTGALPLLKSQFSPGPGDAQF 118
Query: 403 --RVENYHHHQHGPHLLHFRHYP 465
RV + HHH H P H H P
Sbjct: 119 CPRVSHAHHHHHAPQHHHHHHQP 141
>gb|AAO67558.1| Gag protein [Drosophila virilis] gi|29290092|gb|AAO67563.1| Gag
protein [Drosophila virilis]
Length = 1037
Score = 36.2 bits (82), Expect = 0.21
Identities = 16/35 (45%), Positives = 19/35 (53%)
Frame = +3
Query: 309 SNNSCRSAFWWRSCLRCSSPHPATRCTNSRSTGGK 413
S N CR F +CL+C HP T CT R+T K
Sbjct: 636 SKNYCRRPF---ACLKCGEQHPTTTCTKPRNTPAK 667
>gb|AAL30071.1| Maxi-KH type RNA binding protein Sam68 [Gallus gallus]
Length = 433
Score = 36.2 bits (82), Expect = 0.21
Identities = 31/89 (34%), Positives = 39/89 (42%), Gaps = 3/89 (3%)
Frame = -2
Query: 371 VRGR-ASQTRPPPESRAAGIV*QGISSPGCPRPPPFFPLLKESWWTTQIVHTESRGRPYD 195
VRGR A+ PPP R G+ P P PPP L++ + I + R
Sbjct: 271 VRGRGAAPPPPPPVPRGRGV------GPPPPPPPPRGALVRGAPVRGAIARGAAVARGVP 324
Query: 194 PPPA--STPSTRWRSALIVRCQLQE*PRP 114
PPPA P+ R R+A I R L P P
Sbjct: 325 PPPAVRGAPAPRARAAGIQRIPLPPPPAP 353
>dbj|BAB69901.1| ORF4 [TT virus]
Length = 273
Score = 36.2 bits (82), Expect = 0.21
Identities = 22/59 (37%), Positives = 32/59 (53%)
Frame = -3
Query: 424 GGDNFPPVDLELVQRVAGCGEEHRKQDRHQKAERQELFDKEFLHRVARDLHHFSRSSRR 248
GGD+F P DLE +A E+ + R ++ R+ F K +H VAR+ SRS R+
Sbjct: 113 GGDDFDPADLE--DLLAAVEEDEHRAPRKSRSRRRLRFGKSVVHLVARER---SRSPRK 166
