KCC009693A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC009693A_C01 KCC009693A_c01
cttgcTGAATCTTCATTTGCCAAACACCAATCACAATGGCCGTTTCCATGAAGATGCAGC
AGCGCACTATCGCGACTGCCAGCAAGCAGTCCATCGCGCCTGTGGCCCGCCCCGTGGCCC
GCCCCTTCAGCGCCCGTCGCCCCGTGGCCGCTGCTGTTCGCTCTAGCGAGGAGGTTGCTC
GCCGCAGCAGCGTCGTCGTGCGCGCTGCTGCCCCGGCTCCCGCTGCTGCCTCGGCCGACA
AGGCCACCGCTGCGGAGTACTACGCTCTGGTGTGCAACGCTGAGTGGTTCTTCATGGACC
CCCAGAACGAGTCCGTGGCTGAGCAGCTGCGCGAGAAGGTTCGCTTTTTTAAGGAGCAGA
ACAAGGAGCGCGACTTCTTCATCGTGCCCAACCCCAAGTGGCTGGACGCCAAGTTCCCTG
AGCAGGCCAAGCAGGTGAAGCGCCCCTGCGTGGCGCTGGTCTCCACCGACAAGATGTGGA
TCACGTTCATGAAGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC009693A_C01 KCC009693A_c01
         (496 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200633.1| unknown protein (sp|P72777) -related [Arabidops...    77  1e-13
ref|NP_682289.1| ORF_ID:tll1499~hypothetical protein [Thermosyne...    54  8e-07
ref|NP_484260.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    54  8e-07
ref|NP_893223.1| conserved hypothetical protein [Prochlorococcus...    52  4e-06
ref|NP_053814.1| ORF108 [Porphyra purpurea] gi|1723382|sp|P51204...    48  8e-05

>ref|NP_200633.1| unknown protein (sp|P72777) -related [Arabidopsis thaliana]
           gi|8777326|dbj|BAA96916.1| gene_id:MCK7.12~similar to
           unknown protein~sp|P72777 [Arabidopsis thaliana]
          Length = 211

 Score = 77.0 bits (188), Expect = 1e-13
 Identities = 44/103 (42%), Positives = 65/103 (62%)
 Frame = +3

Query: 186 SSVVVRAAAPAPAAASADKATAAEYYALVCNAEWFFMDPQNESVAEQLREKVRFFKEQNK 365
           SS    AA      +S +K  + +Y+ LV NA+  FM  + E   EQL E++R+F E+  
Sbjct: 52  SSSFKTAATSIEQQSSVNKGESTKYHFLVANAK--FMLDEEEHFQEQLFERLRYFGEREL 109

Query: 366 ERDFFIVPNPKWLDAKFPEQAKQVKRPCVALVSTDKMWITFMK 494
            +DF++V  PK+LD  FP+  ++++RP VALVST+  WITFMK
Sbjct: 110 VQDFWLVIEPKFLD-NFPKITQRLRRPAVALVSTNGTWITFMK 151

>ref|NP_682289.1| ORF_ID:tll1499~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22295224|dbj|BAC09051.1|
           ORF_ID:tll1499~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 106

 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 27/82 (32%), Positives = 51/82 (61%), Gaps = 1/82 (1%)
 Frame = +3

Query: 252 AEYYALVCNAEWFFMDPQNESVAEQLREKVRFFKEQNKERDFFIVPNPKWLD-AKFPEQA 428
           A YY ++ + ++     + E + E  RE+ R ++EQ KE DF++VP P +L+  +F EQ 
Sbjct: 2   ATYYYILASKKFL---TEEEPLEEVFRERQRHYREQGKEIDFWLVPEPAFLEQPQFAEQK 58

Query: 429 KQVKRPCVALVSTDKMWITFMK 494
            +  +P  A++ST++ +I ++K
Sbjct: 59  ARCPQPAAAIISTNQQFIQWLK 80

>ref|NP_484260.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25319200|pir||AH1833
           hypothetical protein all0216 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17135194|dbj|BAB77740.1|
           ORF_ID:all0216~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 111

 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 27/80 (33%), Positives = 49/80 (60%), Gaps = 1/80 (1%)
 Frame = +3

Query: 258 YYALVCNAEWFFMDPQNESVAEQLREKVRFFKEQNKERDFFIVPNPKWLDA-KFPEQAKQ 434
           YY ++ +  +     Q E + E L+E+ R + EQ KE DF++VP P +L+A +F +   +
Sbjct: 6   YYYVLASRRFLL---QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAK 62

Query: 435 VKRPCVALVSTDKMWITFMK 494
             +P  A++ST+  +IT++K
Sbjct: 63  CPQPAAAIISTNSQFITWLK 82

>ref|NP_893223.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1378] gi|33640030|emb|CAE19565.1|
           conserved hypothetical protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 105

 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 43/63 (67%), Gaps = 1/63 (1%)
 Frame = +3

Query: 309 ESVAEQLREKVRFFKEQNKERDFFIVPNPKWL-DAKFPEQAKQVKRPCVALVSTDKMWIT 485
           E + E L+E++R +KE  KE DF+++ NP +L  + F + +K++     A++STDK +IT
Sbjct: 18  EPLEEILKERIRNYKENKKEIDFWLLKNPSFLKSSAFLDLSKKIPNTPAAVISTDKKFIT 77

Query: 486 FMK 494
           F+K
Sbjct: 78  FLK 80

>ref|NP_053814.1| ORF108 [Porphyra purpurea] gi|1723382|sp|P51204|YC54_PORPU
           HYPOTHETICAL 12.7 KD PROTEIN YCF54 (ORF108)
           gi|2147499|pir||S73125 hypothetical protein 108 - red
           alga (Porphyra purpurea) chloroplast
           gi|1276670|gb|AAC08090.1| ORF108 [Porphyra purpurea]
          Length = 108

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 21/63 (33%), Positives = 41/63 (64%), Gaps = 1/63 (1%)
 Frame = +3

Query: 309 ESVAEQLREKVRFFKEQNKERDFFIVPNPKWLDAKFPEQAKQ-VKRPCVALVSTDKMWIT 485
           E + E  RE++ +++  NKE DF+++PNPK+L+     + K  V    +A++ST+ ++I 
Sbjct: 18  EPLEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNLVPNEAIAIISTNSIFIN 77

Query: 486 FMK 494
           ++K
Sbjct: 78  WLK 80



EST assemble image


clone accession position
1 MXL070h08_r BP097150 1 243
2 MX233b08_r BP091059 6 293
3 MX258f10_r BP092755 26 496




Chlamydomonas reinhardtii
Kazusa DNA Research Institute