KCC008717A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC008717A_C01 KCC008717A_c01
cGCACATACACATACCTGCATCCGCACAACCACTACTCACTCCACACCTAACTACTAGCA
AAATGGCGTCGGGTAGCTCCAAGGCCGTCATCAAGAATGCGGACATGTCTGAGGAGATGC
AGGCAGACGCCGTGGACTGCGCCACTCAGGCCCTGGAGAAGTACAACATCGAGAAGGACA
TTGCGTGCCTACATCAAGAAGGAGTTCGACCGGAAGCACAACCCGACGTGGCACTGCATC
GTCGGCCGCAACTTCGGCTCCTACGTAACACACGAAACGAAGCACTTCATTTACTTCTAC
CTTGGGCAGGTGGCCATCCTGCTGTTCAAGTCGGGCTAAGCGGCCGCGGAGCTTCGGGCG
CGCGGGAGTTGGACTCAGGCGGTAGCGCGGGGGGCGCTAGGGACATAGCGGGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC008717A_C01 KCC008717A_c01
         (414 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39580|DYL1_CHLRE DYNEIN 8 KD LIGHT CHAIN, FLAGELLAR OUTER AR...   113  6e-43
ref|NP_525075.1| cut up CG6998-PA [Drosophila melanogaster] gi|2...   108  7e-38
gb|AAH59707.1| Unknown (protein for MGC:73406) [Danio rerio]          109  9e-38
ref|NP_080832.1| dynein light chain 2 [Mus musculus] gi|18087855...   109  1e-37
gb|AAH56312.1| Unknown (protein for MGC:66081) [Danio rerio]          109  1e-37

>sp|Q39580|DYL1_CHLRE DYNEIN 8 KD LIGHT CHAIN, FLAGELLAR OUTER ARM gi|1076207|pir||A56444
           dynein light chain, 8k - Chlamydomonas reinhardtii
           gi|755460|gb|AAA80586.1| 8 kDa outer arm dynein light
           chain
          Length = 91

 Score =  113 bits (282), Expect(2) = 6e-43
 Identities = 50/54 (92%), Positives = 52/54 (95%)
 Frame = +1

Query: 175 RTLRAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 336
           + + AYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 38  KDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

 Score = 81.6 bits (200), Expect(2) = 6e-43
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 63  MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA 185
           MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA
Sbjct: 1   MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA 41

>ref|NP_525075.1| cut up CG6998-PA [Drosophila melanogaster]
           gi|24639734|ref|NP_726942.1| cut up CG6998-PB
           [Drosophila melanogaster] gi|24639736|ref|NP_726943.1|
           cut up CG6998-PC [Drosophila melanogaster]
           gi|24639738|ref|NP_726944.1| cut up CG6998-PD
           [Drosophila melanogaster]
           gi|2494223|sp|Q24117|DYL1_DROME Dynein light chain 1,
           cytoplasmic (8 kDa dynein light chain) (Cut up protein)
           gi|1209059|gb|AAB04148.1| cytoplasmic dynein light chain
           1 gi|4097197|gb|AAD00072.1| 8kd dynein light chain
           gi|4097201|gb|AAD00074.1| 8kd dynein light chain
           gi|7290522|gb|AAF45975.1| CG6998-PA [Drosophila
           melanogaster] gi|22831697|gb|AAN09126.1| CG6998-PB
           [Drosophila melanogaster] gi|22831698|gb|AAN09127.1|
           CG6998-PC [Drosophila melanogaster]
           gi|22831699|gb|AAN09128.1| CG6998-PD [Drosophila
           melanogaster]
          Length = 89

 Score =  108 bits (270), Expect(2) = 7e-38
 Identities = 47/54 (87%), Positives = 52/54 (96%)
 Frame = +1

Query: 175 RTLRAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 336
           + + AYIKKEFD+K+NPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 36  KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

 Score = 69.3 bits (168), Expect(2) = 7e-38
 Identities = 34/35 (97%), Positives = 34/35 (97%)
 Frame = +3

Query: 81  KAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA 185
           KAVIKNADMSEEMQ DAVDCATQALEKYNIEKDIA
Sbjct: 5   KAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIA 39

>gb|AAH59707.1| Unknown (protein for MGC:73406) [Danio rerio]
          Length = 89

 Score =  109 bits (273), Expect(2) = 9e-38
 Identities = 48/54 (88%), Positives = 52/54 (95%)
 Frame = +1

Query: 175 RTLRAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 336
           + + AYIKKEFD+K+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 36  KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

 Score = 67.8 bits (164), Expect(2) = 9e-38
 Identities = 33/35 (94%), Positives = 34/35 (96%)
 Frame = +3

Query: 81  KAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA 185
           KAVIKNADMSEEMQ DAV+CATQALEKYNIEKDIA
Sbjct: 5   KAVIKNADMSEEMQQDAVECATQALEKYNIEKDIA 39

>ref|NP_080832.1| dynein light chain 2 [Mus musculus] gi|18087855|ref|NP_542408.1|
           dynein light chain 2 [Homo sapiens]
           gi|18093106|ref|NP_542428.1| dynein light chain-2
           [Rattus norvegicus] gi|12847305|dbj|BAB27516.1| unnamed
           protein product [Mus musculus]
           gi|14280356|gb|AAK57536.1| dynein light chain-2 [Rattus
           norvegicus] gi|14789617|gb|AAH10744.1| Dynein light
           chain 2 [Homo sapiens] gi|15030083|gb|AAH11289.1| Dynein
           light chain 2 [Mus musculus] gi|15545995|gb|AAK38749.1|
           dynein light chain 2 [Mus musculus]
           gi|26252105|gb|AAH40822.1| Dynein light chain 2 [Mus
           musculus] gi|26340386|dbj|BAC33856.1| unnamed protein
           product [Mus musculus] gi|26347245|dbj|BAC37271.1|
           unnamed protein product [Mus musculus]
           gi|26390313|dbj|BAC25877.1| unnamed protein product [Mus
           musculus] gi|33150704|gb|AAP97230.1|AF112997_1 protein
           inhibitor of neuronal nitric oxide synthase [Homo
           sapiens]
          Length = 89

 Score =  109 bits (273), Expect(2) = 1e-37
 Identities = 48/54 (88%), Positives = 52/54 (95%)
 Frame = +1

Query: 175 RTLRAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 336
           + + AYIKKEFD+K+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 36  KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

 Score = 67.4 bits (163), Expect(2) = 1e-37
 Identities = 32/35 (91%), Positives = 34/35 (96%)
 Frame = +3

Query: 81  KAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA 185
           KAVIKNADMSE+MQ DAVDCATQA+EKYNIEKDIA
Sbjct: 5   KAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIA 39

>gb|AAH56312.1| Unknown (protein for MGC:66081) [Danio rerio]
          Length = 89

 Score =  109 bits (273), Expect(2) = 1e-37
 Identities = 48/54 (88%), Positives = 52/54 (95%)
 Frame = +1

Query: 175 RTLRAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 336
           + + AYIKKEFD+K+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 36  KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

 Score = 67.4 bits (163), Expect(2) = 1e-37
 Identities = 32/35 (91%), Positives = 34/35 (96%)
 Frame = +3

Query: 81  KAVIKNADMSEEMQADAVDCATQALEKYNIEKDIA 185
           KAVIKNADMSE+MQ DAVDCATQA+EKYNIEKDIA
Sbjct: 5   KAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIA 39



EST assemble image


clone accession position
1 MX064e10_r BP088596 1 414
2 MX235f07_r BP091225 2 204




Chlamydomonas reinhardtii
Kazusa DNA Research Institute