Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC008686A_C01 KCC008686A_c01
(464 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC84731.1| hypothetical protein [Oryza sativa (japonica cul... 42 0.003
ref|NP_116424.1| T74 [Tupaia herpesvirus] gi|14210756|gb|AAK5711... 42 0.003
pir||S27224 N-methyl-D-aspartate receptor epsilon-4 chain - mouse 37 0.14
gb|AAQ09551.1| rev protein [Human immunodeficiency virus 1] 37 0.14
ref|NP_032198.1| glutamate receptor, ionotropic, NMDA2D (epsilon... 37 0.14
>dbj|BAC84731.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 170
Score = 42.0 bits (97), Expect = 0.003
Identities = 31/98 (31%), Positives = 43/98 (43%)
Frame = +2
Query: 170 RQRQTKRWKLRQAPAGERQQPLAGLVANSNRARRKTRLCRGCTCGKPLMEPRR*CRGRSG 349
R+RQ +R + R A GER++ LA L + R RRK R GC G+ P + GR
Sbjct: 29 RRRQRRRGRQR-ARGGERRRELALLAEEARRRRRKRRAAAGCGGGEARRRPTKDGEGRGA 87
Query: 350 SFGAACWAG*RTSSCLEFTTRGKRPQRRRRLPRCGRRS 463
+ G A T G + + R+ PR S
Sbjct: 88 AVGVAAGGS---------ATEGVQLDQARQPPRLAAAS 116
>ref|NP_116424.1| T74 [Tupaia herpesvirus] gi|14210756|gb|AAK57119.1| T74 [Tupaia
herpesvirus]
Length = 464
Score = 42.0 bits (97), Expect = 0.003
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -2
Query: 460 PPPAPWKPP---PPLRPFSARCKFEARRSTLSRPARRPK*AAPTTALASWFHQGLPAGTS 290
PPP+PW+PP PP RP + R RP RP AAPT + A + P S
Sbjct: 402 PPPSPWRPPLHRPPARP-------QLRPRPRPRPRPRPPAAAPTRSRAGYSPGPPPRTRS 454
Query: 289 TTKAGLSSCP 260
+T+ + S P
Sbjct: 455 STRRVVVSSP 464
>pir||S27224 N-methyl-D-aspartate receptor epsilon-4 chain - mouse
Length = 1323
Score = 36.6 bits (83), Expect = 0.14
Identities = 28/73 (38%), Positives = 30/73 (40%), Gaps = 5/73 (6%)
Frame = -2
Query: 463 APPPAPWKPPPPLRPFSARCKFEARRSTLSRPARRPK*AAP-----TTALASWFHQGLPA 299
APPP PW PP P ARC R + R AAP A W PA
Sbjct: 1196 APPPPPWAAGPP-APRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGW-DLPPPA 1253
Query: 298 GTSTTKAGLSSCP 260
TS + LSSCP
Sbjct: 1254 PTSRSLEDLSSCP 1266
>gb|AAQ09551.1| rev protein [Human immunodeficiency virus 1]
Length = 126
Score = 36.6 bits (83), Expect = 0.14
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 QRRIRASSLQINMSATRASLLAASLLGRSSTIGCLKLAPLEQLA--CARGCATAANEAME 195
+RR RA QI + R + +SLLGRS+ L+L PLE+L C+ C T+ + +
Sbjct: 45 RRRWRARQRQIRALSER---ILSSLLGRSTEPVPLQLPPLERLKLDCSEDCGTSGTQQSQ 101
Query: 196 AAASTSGREATAPGWIGRELKPGKK 270
+ GR + G L+PG K
Sbjct: 102 GTETGVGRPQIS-GESSDILEPGTK 125
>ref|NP_032198.1| glutamate receptor, ionotropic, NMDA2D (epsilon 4); GluRepsilon4 [Mus
musculus] gi|6093513|sp|Q03391|NME4_MOUSE Glutamate
[NMDA] receptor subunit epsilon 4 precursor (N-methyl
D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D)
gi|2160438|dbj|BAA02254.1| glutamate receptor channel
subunit epsilon 4 [Mus musculus]
Length = 1323
Score = 36.6 bits (83), Expect = 0.14
Identities = 28/73 (38%), Positives = 30/73 (40%), Gaps = 5/73 (6%)
Frame = -2
Query: 463 APPPAPWKPPPPLRPFSARCKFEARRSTLSRPARRPK*AAP-----TTALASWFHQGLPA 299
APPP PW PP P ARC R + R AAP A W PA
Sbjct: 1196 APPPPPWAAGPP-APRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGW-DLPPPA 1253
Query: 298 GTSTTKAGLSSCP 260
TS + LSSCP
Sbjct: 1254 PTSRSLEDLSSCP 1266
