KCC008478A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC008478A_C01 KCC008478A_c01
ctgaagaacccctggtccaagccgcggcggcctcgccctccaacccgggcatcccgccct
cgcctctcatgagcttcctgCGCGTCAAGCCCGGGACGGCGGGCATGGTGCTGGCGGACT
TCGACTCGCGCTTCAACTCGCCTTACTACCAGTCCGAGTACGATGACGGCTTCAACATTA
CGGTGCAGGCGCTGGTGGACGCGTCGGTGCTCCTTGCGCGCACGCTGCACAGCCTGGCAG
GCAGCCCCGAGACCCCCGCCCTGGAGGTGAACCGCACCGCCACCCGCTTCCTGGTGGCGG
AGCTGGCGGTGTGCCTCATCCTGGAGGACCCCGGCATGCGCTGCCCACTGGCATCGCTGC
TCATGAGCCCAGACGTGGACGTGTACTATGACGGCTCCACCTCGGACGCGGTCAAGGGCT
AACCCGGTGTGATGCGCTGGGTGGATGTAGACCCGCGTGCGTCCAGGAGCAAGCCCAACC
TGGCGCGCTTTGTATACAACTACCTGGGCAACCTGACGGCGGCGCCGCTGCCGGCGGACC
GCTCCAACAGCTCCTGGGAGGGTGCGCCCTGCGACACCACCGTCAACATCTGCCCCGCGC
CCCTGGCCTGCATCGGCTGGCGCTACGGCACCAAGGACCCCGCGGGCATGGGCCGCTGCC
GCAACACCACCACCCTGTACTTTCCTGCCTACAGCACGCGGCTTTGGTATGGCAACCGCC
AGGGCTCGTGGCGCTGGTGGGTGGACGACGCCGCGGCGGTGTGGGAGCGCAACTACTCCT
GGCCCACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC008478A_C01 KCC008478A_c01
         (788 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q8GUM5|NICA_ARATH Nicastrin precursor gi|27311553|gb|AAO00742...   100  2e-20
pir||T49017 hypothetical protein F3C22.40 - Arabidopsis thaliana...   100  2e-20
ref|NP_190832.2| expressed protein [Arabidopsis thaliana]              87  4e-16
dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 69  7e-11
gb|AAC82365.1| unknown [Myxococcus xanthus]                            61  2e-08

>sp|Q8GUM5|NICA_ARATH Nicastrin precursor gi|27311553|gb|AAO00742.1| Unknown protein
            [Arabidopsis thaliana] gi|30725508|gb|AAP37776.1|
            At3g52640 [Arabidopsis thaliana]
          Length = 676

 Score =  100 bits (250), Expect = 2e-20
 Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 12/251 (4%)
 Frame = +3

Query: 15   VQAAAASPSNPGIPPSPLMSFLRVKPGTAGMVLADFDSRFNSPYYQSEYDDGFNITVQAL 194
            ++  +A  +NPGIPPS LM+F+R  P T+ +VL DFD+ F + +Y S  DD  NI   ++
Sbjct: 389  IKILSADTANPGIPPSSLMAFMRKNPQTSAVVLEDFDTNFVNKFYHSHLDDLSNINSSSV 448

Query: 195  VDASVLLARTLHSLAGSPETP------ALEVNRTATRFLVAELAVCLILEDPGMRCPLAS 356
            V A+ ++ARTL+ LA   +        ++ VN +     V EL  CL+  +PG+ C L  
Sbjct: 449  VAAASVVARTLYILASDNKDTSNSALGSIHVNAS----FVEELLTCLLACEPGLSCNLVK 504

Query: 357  LLMSPDVDVYYDGSTSDAVKG*PGVMRWVDVDPRASRSKP------NLARFVYNYLGNLT 518
              +SP       G+ +  + G P              SKP      +++RF++N+L + T
Sbjct: 505  DYISPTNTC--PGNYAGVILGEPS-------------SKPYLGYVGDVSRFLWNFLADKT 549

Query: 519  AAPLPADRSNSSWEGAPCDTTVNICPAPLACIGWRYGTKDPAGMGRCRNTTTLYFPAYST 698
            +  +    + S      C  T  +C              +    G C  +TT Y PAYST
Sbjct: 550  S--VQKGNTTSVCSKGVCSKTDEVCI-----------KAESNKEGTCVVSTTRYVPAYST 596

Query: 699  RLWYGNRQGSW 731
            RL Y +  G+W
Sbjct: 597  RLKYND--GAW 605

>pir||T49017 hypothetical protein F3C22.40 - Arabidopsis thaliana
           gi|7669938|emb|CAB89225.1| putative protein [Arabidopsis
           thaliana]
          Length = 486

 Score =  100 bits (250), Expect = 2e-20
 Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 12/251 (4%)
 Frame = +3

Query: 15  VQAAAASPSNPGIPPSPLMSFLRVKPGTAGMVLADFDSRFNSPYYQSEYDDGFNITVQAL 194
           ++  +A  +NPGIPPS LM+F+R  P T+ +VL DFD+ F + +Y S  DD  NI   ++
Sbjct: 199 IKILSADTANPGIPPSSLMAFMRKNPQTSAVVLEDFDTNFVNKFYHSHLDDLSNINSSSV 258

Query: 195 VDASVLLARTLHSLAGSPETP------ALEVNRTATRFLVAELAVCLILEDPGMRCPLAS 356
           V A+ ++ARTL+ LA   +        ++ VN +     V EL  CL+  +PG+ C L  
Sbjct: 259 VAAASVVARTLYILASDNKDTSNSALGSIHVNAS----FVEELLTCLLACEPGLSCNLVK 314

Query: 357 LLMSPDVDVYYDGSTSDAVKG*PGVMRWVDVDPRASRSKP------NLARFVYNYLGNLT 518
             +SP       G+ +  + G P              SKP      +++RF++N+L + T
Sbjct: 315 DYISPTNTC--PGNYAGVILGEPS-------------SKPYLGYVGDVSRFLWNFLADKT 359

Query: 519 AAPLPADRSNSSWEGAPCDTTVNICPAPLACIGWRYGTKDPAGMGRCRNTTTLYFPAYST 698
           +  +    + S      C  T  +C              +    G C  +TT Y PAYST
Sbjct: 360 S--VQKGNTTSVCSKGVCSKTDEVCI-----------KAESNKEGTCVVSTTRYVPAYST 406

Query: 699 RLWYGNRQGSW 731
           RL Y +  G+W
Sbjct: 407 RLKYND--GAW 415

>ref|NP_190832.2| expressed protein [Arabidopsis thaliana]
          Length = 399

 Score = 86.7 bits (213), Expect = 4e-16
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 12/205 (5%)
 Frame = +3

Query: 15  VQAAAASPSNPGIPPSPLMSFLRVKPGTAGMVLADFDSRFNSPYYQSEYDDGFNITVQAL 194
           ++  +A  +NPGIPPS LM+F+R  P T+ +VL DFD+ F + +Y S  DD  NI   ++
Sbjct: 199 IKILSADTANPGIPPSSLMAFMRKNPQTSAVVLEDFDTNFVNKFYHSHLDDLSNINSSSV 258

Query: 195 VDASVLLARTLHSLAGSPETP------ALEVNRTATRFLVAELAVCLILEDPGMRCPLAS 356
           V A+ ++ARTL+ LA   +        ++ VN +     V EL  CL+  +PG+ C L  
Sbjct: 259 VAAASVVARTLYILASDNKDTSNSALGSIHVNAS----FVEELLTCLLACEPGLSCNLVK 314

Query: 357 LLMSPDVDVYYDGSTSDAVKG*PGVMRWVDVDPRASRSKP------NLARFVYNYLGNLT 518
             +SP       G+ +  + G P              SKP      +++RF++N+L + T
Sbjct: 315 DYISPTNTC--PGNYAGVILGEPS-------------SKPYLGYVGDVSRFLWNFLADKT 359

Query: 519 AAPLPADRSNSSWEGAPCDTTVNIC 593
           +  +    + S      C  T  +C
Sbjct: 360 S--VQKGNTTSVCSKGVCSKTDEVC 382

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 69.3 bits (168), Expect = 7e-11
 Identities = 81/252 (32%), Positives = 102/252 (40%), Gaps = 3/252 (1%)
 Frame = +1

Query: 34  RPPTRASRPRLS*ASCASSPGRRAWCWRTSTRASTRLTTSPSTMTASTLRCRRWWTRRCS 213
           RPPTRAS  R+   +  +    RA   RT  RAS R T   +++T    R         +
Sbjct: 29  RPPTRASPTRMPPRASPTRTPPRASPRRTPPRASPRRTPPRASLTRPPTRAPPTRMPPTA 88

Query: 214 LRARCTAWQAAPRPPPWR*TA--PPPASWWRSWRCASSWRTPACAAHWHRCS*AQ-TWTC 384
              R     +  R PP    A  PP AS  R+   AS  RTP  A+     S A  T T 
Sbjct: 89  PPTRTPPTASPARTPPTESPARTPPTASPARTPPRASPTRTPPRASPRRTPSTASPTRTP 148

Query: 385 TMTAPPRTRSRANPV*CAGWM*TRVRPGASPTWRALYTTTWAT*RRRRCRRTAPTAPGRV 564
              +P RT  RA+P        TR  P ASP      T   A+ RR   R +   AP R 
Sbjct: 149 PRASPRRTPPRASP--------TRTPPRASPK----RTPPRASPRRTPPRASPTRAPPRA 196

Query: 565 RPATPPSTSAPRPWPASAGATAPRTPRAWAAAATPPPCTFLPTARGFGMATARARGAGGW 744
            P   P T++P   P  A  T  RTP   + A TPP  +   T      A   +R +   
Sbjct: 197 SPKRTPPTASPTRTPPRASPT--RTPPTESPARTPPRASPTRTPPTESPARTPSRASTRR 254

Query: 745 TTPRRCGSATTP 780
           T PR   + T P
Sbjct: 255 TPPRASPTRTPP 266

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 65/222 (29%), Positives = 84/222 (37%)
 Frame = -3

Query: 759 PPRRRPPTSATSPGGCHTKAACCRQESTGWWCCGSGPCPRGPWCRSASRCRPGARGRC*R 580
           PP R PPT+   P      A+  R   T        P    P   +AS  R   R    R
Sbjct: 80  PPTRMPPTAP--PTRTPPTASPARTPPT------ESPARTPP---TASPARTPPRASPTR 128

Query: 579 WCRRAHPPRSCWSGPPAAAPPSGCPGSCIQSAPGWACSWTHAGLHPPSASHRVSP*PRPR 400
              RA P R+  +  P   PP   P    ++ P  + + T     PP AS + +P   PR
Sbjct: 129 TPPRASPRRTPSTASPTRTPPRASPR---RTPPRASPTRT-----PPRASPKRTP---PR 177

Query: 399 WSRHSTRPRLGS*AAMPVGSACRGPPG*GTPPAPPPGSGWRCGSPPGRGSRGCLPGCAAC 220
            S   T PR     A P  S  R PP       PP  S  R  +PP   S    P  A+ 
Sbjct: 178 ASPRRTPPRASPTRAPPRASPKRTPPTASPTRTPPRASPTR--TPPTE-SPARTPPRASP 234

Query: 219 AQGAPTRPPAPAP*C*SRHRTRTGSKAS*SASRSPPAPCPPS 94
            +  PT  PA  P   S  RT   +  + +  R+ P   PP+
Sbjct: 235 TRTPPTESPARTPSRASTRRTPPRASPTRTPPRASPKRTPPT 276

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 67/231 (29%), Positives = 83/231 (35%), Gaps = 20/231 (8%)
 Frame = -3

Query: 645 PRGPWCRSASRCRPGARGRC*RWCRRAHPPRSCWSGPPAAAPPSGCPGSC------IQSA 484
           PR    R+  R  P  R    R   R  PPR+  + PP  APP+  P +         ++
Sbjct: 41  PRASPTRTPPRASP--RRTPPRASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTAS 98

Query: 483 PGWACSWTHAGLHPPSASHRVSP*PRPRWSRHSTRPRLGS*AAMPVGSACRGPPG*GTPP 304
           P            PP+AS   +P   PR S   T PR          S  R PP      
Sbjct: 99  PARTPPTESPARTPPTASPARTP---PRASPTRTPPRASPRRTPSTASPTRTPPRASPRR 155

Query: 303 APPPGSGWRCGSPPGRGSRGCLPGCAACAQGAPTRPPAPAP*C*SRHR-------TRTGS 145
            PP  S  R    P R S    P  A+  +  P   P  AP   S  R       TRT  
Sbjct: 156 TPPRASPTR---TPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPTASPTRTPP 212

Query: 144 KAS*SASRSPPAPCPPSRA*RAGSS----*EARAGCP---GWRARPPRLGP 13
           +A  S +R+PP   P     RA  +     E+ A  P     R  PPR  P
Sbjct: 213 RA--SPTRTPPTESPARTPPRASPTRTPPTESPARTPSRASTRRTPPRASP 261

 Score = 40.0 bits (92), Expect = 0.043
 Identities = 48/144 (33%), Positives = 59/144 (40%), Gaps = 9/144 (6%)
 Frame = +1

Query: 376 WTCTMTAPPRTRSRANPV*CAGWM*TRVRPGASPTWRALYTTTWAT*RRRRCRRTAPTA- 552
           +T ++T PP   +RA+P        TR+ P ASPT          T  R   RRT P A 
Sbjct: 23  YTTSLTRPP---TRASP--------TRMPPRASPT---------RTPPRASPRRTPPRAS 62

Query: 553 ----PGRVRPATPPSTSAPRPWPASAGATAPRTPRAWAAAATPP---PCTFLPTARGFGM 711
               P R     PP+ + P   P +A  T  RTP   + A TPP   P    PTA     
Sbjct: 63  PRRTPPRASLTRPPTRAPPTRMPPTAPPT--RTPPTASPARTPPTESPARTPPTA----- 115

Query: 712 ATARARGAGGWT-TPRRCGSATTP 780
           + AR       T TP R     TP
Sbjct: 116 SPARTPPRASPTRTPPRASPRRTP 139

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 60.8 bits (146), Expect = 2e-08
 Identities = 67/240 (27%), Positives = 80/240 (32%), Gaps = 15/240 (6%)
 Frame = -3

Query: 771 CAPTPPRRRPPTSATSPGGCHT--KAACCRQESTGWWCCGSGPCPRGPWCRSASRCRPGA 598
           CAP  P R PP      G  H   +  C R+  +G  C       R      + RC P  
Sbjct: 54  CAPRAPPRSPPPRRRHRGSRHRSFRPTCARR--SGRRCPAPSRHARRNPAGPSRRCGPPR 111

Query: 597 RGRC*RWCRRAHPPRSCWSGPPAAAPPSG-----------CPGSCIQSAPGWACSWTHAG 451
           +    R C     P  C + P A AP +G             G C     G A   T  G
Sbjct: 112 KSTPTRCCTPCPAPPRCRARPSAPAPSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHG 171

Query: 450 LHPPSASHRVSP*PRPRWSRHSTRPRLGS*AAMPVGSACRGPPG*GTPPA--PPPGSGWR 277
             P   S   SP P     R  T PR       P  ++  G     T PA  PPP    R
Sbjct: 172 AEPSPPSQSPSPAPASSGGRRRTHPR-------PARASAAG----ATAPACLPPP----R 216

Query: 276 CGSPPGRGSRGCLPGCAACAQGAPTRPPAPAP*C*SRHRTRTGSKAS*SASRSPPAPCPP 97
           C   PG G     P   + +   P R P   P         +GS A+  A  SP    PP
Sbjct: 217 CCGRPGTGCARTAPPSTSASHPPPPRSPGTPP-------RASGSPAAAPAPPSPACRPPP 269

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 73/264 (27%), Positives = 86/264 (31%), Gaps = 46/264 (17%)
 Frame = -3

Query: 663 CGSGPCPRGPW---CRSASRCRPGARGRC*RWCRRAHPPRSCWSGPPAAAPPSGCPGSCI 493
           C   P P  P+   C  + R  PGAR           PP    S PP    P   PG C 
Sbjct: 10  CHGTPAPGRPFPPPCLLSERTPPGARP----------PPTETASYPP----PQAVPGPCA 55

Query: 492 QSAPGWACSWTHAGLHPPSASHRVSP*PRPRWSRHSTRPRLGS*AAMPVGSACR------ 331
             AP  +         PP   HR S   R R  R +   R G     P   A R      
Sbjct: 56  PRAPPRS--------PPPRRRHRGS---RHRSFRPTCARRSGRRCPAPSRHARRNPAGPS 104

Query: 330 ---GPPG*GTP-------PAPP----------PGSGWRCGSPPGRGSRGCLPGCAACAQ- 214
              GPP   TP       PAPP          P +G  C   P  G   C  GC    + 
Sbjct: 105 RRCGPPRKSTPTRCCTPCPAPPRCRARPSAPAPSAGRTC---PTAGPSSCASGCCPTGRC 161

Query: 213 -------------GAPTRPPAPAP-*C*SRHRTRTGSKAS*SASRSPPAPCPPSRA*RAG 76
                          P++ P+PAP     R RT      + +A  + PA  PP R     
Sbjct: 162 GSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHPRPARASAAGATAPACLPPPRCCGRP 221

Query: 75  SS*EARAGCPGWRAR--PPRLGPG 10
            +  AR   P   A   PP   PG
Sbjct: 222 GTGCARTAPPSTSASHPPPPRSPG 245

 Score = 46.6 bits (109), Expect = 5e-04
 Identities = 71/207 (34%), Positives = 83/207 (39%), Gaps = 27/207 (13%)
 Frame = +1

Query: 244 APRPPPWR*TAPPP-----ASWWRSWR--CA--SSWRTPACAAHWHR--------CS*AQ 372
           APR PP    +PPP      S  RS+R  CA  S  R PA + H  R        C   +
Sbjct: 55  APRAPP---RSPPPRRRHRGSRHRSFRPTCARRSGRRCPAPSRHARRNPAGPSRRCGPPR 111

Query: 373 TWT----CT-MTAPPRTRSRAN-PV*CAGWM*TRVRPGASPTWRALYTTTWAT*RRRRCR 534
             T    CT   APPR R+R + P   AG    R  P A P+  A            RC 
Sbjct: 112 KSTPTRCCTPCPAPPRCRARPSAPAPSAG----RTCPTAGPSSCASGCCPTG-----RCG 162

Query: 535 RTAPTAPGRVRPATPPSTSAPRPWPASAGA---TAPRTPRAWAAAATPPPCTFLPTARGF 705
                 P    P+ P    +P P PAS+G    T PR  RA AA AT P C  LP  R  
Sbjct: 163 SAPGPTPHGAEPSPPS--QSPSPAPASSGGRRRTHPRPARASAAGATAPAC--LPPPRCC 218

Query: 706 GM-ATARARGAGGWTTPRRCGSATTPG 783
           G   T  AR A   T+        +PG
Sbjct: 219 GRPGTGCARTAPPSTSASHPPPPRSPG 245

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 70/238 (29%), Positives = 82/238 (34%), Gaps = 7/238 (2%)
 Frame = +1

Query: 10  PWSKPRRPRPPTR--ASRPRLS*ASCASSPGRRAWCWRTSTRASTRLTTSPSTMTASTLR 183
           P + PR P P  R   SR R    +CA   GRR       +R + R    PS        
Sbjct: 56  PRAPPRSPPPRRRHRGSRHRSFRPTCARRSGRRC---PAPSRHARRNPAGPS-------- 104

Query: 184 CRRWWTRRCSLRARCTAWQAAPRPPPWR*TAPPPASWWRSWRCASSWRTPACAAHW---H 354
            RR    R S   RC      P P P R  A P A    + R   +    +CA+      
Sbjct: 105 -RRCGPPRKSTPTRC----CTPCPAPPRCRARPSAPAPSAGRTCPTAGPSSCASGCCPTG 159

Query: 355 RCS*AQTWTC--TMTAPPRTRSRANPV*CAGWM*TRVRPGASPTWRALYTTTWAT*RRRR 528
           RC  A   T      +PP       P    G   T  RP  +    A   T  A     R
Sbjct: 160 RCGSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHPRPARAS---AAGATAPACLPPPR 216

Query: 529 CRRTAPTAPGRVRPATPPSTSAPRPWPASAGATAPRTPRAWAAAATPPPCTFLPTARG 702
           C     T   R     PPSTSA  P P  +  T PR   + AAA  PP     P   G
Sbjct: 217 CCGRPGTGCART---APPSTSASHPPPPRSPGTPPRASGSPAAAPAPPSPACRPPPPG 271



EST assemble image


clone accession position
1 MX245a11_r BP091839 1 477
2 MX001d04_r BP086072 376 788




Chlamydomonas reinhardtii
Kazusa DNA Research Institute