KCC008434A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC008434A_C01 KCC008434A_c01
gCCCGCGCTCGCATTACATAAAACGCCTGCAGACGCGCGCGCCGCTAGAGAGCAAAGCCG
TTTTCACCACCACAACTATCAGAATTTAGTCTTGCATCTTAAAATGTCCCGAACACGCCC
TGCCTTGGATAGCCCCAACTAAAGCCCCCTGCTCCTCGGTCCTCGACTTAATGGCGGTCG
GCGCAGCTGAACCCGGGCGCCTCCAAGTGCTCACACACAAACTATTACTTCATGCCGAAT
GGGACGCACCACGCCGCGTCACGCTGTGATGCCTCTTGCGTGAACAGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC008434A_C01 KCC008434A_c01
         (289 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_047066.1| L1231.6 [Leishmania major] gi|7494049|pir||T028...    33  1.1
ref|ZP_00025278.1| hypothetical protein [Ralstonia metallidurans]      33  1.1
ref|NP_870483.1| similar to c-type cytochrome precursor [Pirellu...    32  3.3
ref|NP_572072.1| ORF 20; EBV BXRF1 homolog [Human herpesvirus 8]...    31  4.2
gb|AAF75586.1|AF153341_1 winged helix/forkhead transcription fac...    30  7.2

>ref|NP_047066.1| L1231.6 [Leishmania major] gi|7494049|pir||T02828 conserved
           hypothetical protein L1231.6 [imported] - Leishmania
           major (strain Friedlin) gi|2266904|gb|AAC24651.1|
           L1231.6 [Leishmania major]
          Length = 743

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/71 (30%), Positives = 31/71 (42%)
 Frame = +2

Query: 68  HHNYQNLVLHLKMSRTRPALDSPN*SPLLLGPRLNGGRRS*TRAPPSAHTQTITSCRMGR 247
           HH Y +   HL+ S    +      SP    P  +   R     PPS H  T+T+     
Sbjct: 270 HHRYHHHPHHLQSSPHTASSAPVTPSPARQSPAASSVMRKGAAPPPSRHAPTVTAA-AAA 328

Query: 248 TTPRHAVMPLA 280
           +TP+H  MPL+
Sbjct: 329 STPKH--MPLS 337

>ref|ZP_00025278.1| hypothetical protein [Ralstonia metallidurans]
          Length = 124

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 26/90 (28%), Positives = 40/90 (43%)
 Frame = +2

Query: 8   LALHKTPADARAAREQSRFHHHNYQNLVLHLKMSRTRPALDSPN*SPLLLGPRLNGGRRS 187
           LALHK+PA  RA R+++       + L+L   ++R +            +G      RR+
Sbjct: 42  LALHKSPATQRAYRKEA-------ERLILWAIVARGKALSSLTTKDATTIGHFCTDPRRA 94

Query: 188 *TRAPPSAHTQTITSCRMGRTTPRHAVMPL 277
                P  HT+  T  R+  TT R A  P+
Sbjct: 95  SAGLDPRGHTRRRTGARLS-TTSRRARSPM 123

>ref|NP_870483.1| similar to c-type cytochrome precursor [Pirellula sp.]
           gi|32448043|emb|CAD77560.1| similar to c-type cytochrome
           precursor [Pirellula sp.]
          Length = 668

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = +1

Query: 121 CLG*PQLK--PPAPRSST*WRSAQLNPGA---SKC--SHTNYYFMPNGTHHAASRCDASC 279
           CL   QL   P   RS T W + QL P A     C   H    +  + THHAA    ++C
Sbjct: 407 CLSCHQLHQFPDDTRSRTKWANDQLKPSAIGNDACLQCHDQQQYSTSHTHHAADSTGSNC 466

Query: 280 VN 285
            N
Sbjct: 467 YN 468

>ref|NP_572072.1| ORF 20; EBV BXRF1 homolog [Human herpesvirus 8]
           gi|1718272|gb|AAC57101.1| ORF 20; EBV BXRF1 homolog
           [Human herpesvirus 8] gi|2246529|gb|AAB62654.1| ORF 20,
           herpesvirus saimiri ORF 20 homolog, conserved in other
           herpesviruses [Human herpesvirus 8]
          Length = 320

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 15/31 (48%), Positives = 19/31 (60%)
 Frame = -1

Query: 199 RPGSAAPTAIKSRTEEQGALVGAIQGRACSG 107
           RP +A PT  KSRT+++G       G ACSG
Sbjct: 289 RPWTAQPTRAKSRTKDKGTPAFPRAGPACSG 319

>gb|AAF75586.1|AF153341_1 winged helix/forkhead transcription factor [Homo sapiens]
          Length = 402

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 PEHALPWIAPTKAPCSSVLDLMAVGAAEPGRL 203
           P  A P + P  APC ++L L A GA EP RL
Sbjct: 303 PLPAFPALLPA-APCRALLPLCAYGAGEPARL 333



EST assemble image


clone accession position
1 LCL097d12_r AV631642 1 279
2 MX229e11_r BP090817 61 348




Chlamydomonas reinhardtii
Kazusa DNA Research Institute