KCC008087A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC008087A_C01 KCC008087A_c01
tgagagagagagagagaactagtctcgtttttttttttttttttttGAATCTTCTGCTTT
TACACACCACCCAATGTGGGGCAGCGTCCGTGTTGACTCTGATCCCGGCTCCGCCCTTCG
AATTGTCCGTGACGGGCCGTTGAGTTCTGTCGAGACCCCCTCCATGCACTTCCATCCACC
ACTCCCGCCTCTCACTCACCACTCTCATGCTTTGGAACTTGCACCTGCCTGCACGCCTCT
CCCCTAAGGCCGCACCCAACTCAGTTGGAGCTAGGTGCCATCTCGGTTTCTTATAACATC
ATCGTCATCCTACTCTACTTGGCATGGCTCAGCAACGGCCTTCCGCGCACGACCCTAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC008087A_C01 KCC008087A_c01
         (358 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC98040.1| mKIAA0857 protein [Mus musculus]                       35  0.20
gb|AAH10555.1| ZFP protein [Homo sapiens]                              33  0.78
ref|NP_061121.1| zinc finger protein ZFP [Homo sapiens] gi|80993...    33  0.78
gb|EAA42454.1| GLP_587_23152_28563 [Giardia lamblia ATCC 50803]        33  0.78
ref|NP_191591.2| bZIP protein [Arabidopsis thaliana] gi|16604629...    33  1.0

>dbj|BAC98040.1| mKIAA0857 protein [Mus musculus]
          Length = 1353

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 26/72 (36%), Positives = 31/72 (42%), Gaps = 1/72 (1%)
 Frame = +2

Query: 98   SDPGSALRIVRDGPLSSVETPSMHFHPP-LPPLTHHSHALELAPACTPLP*GRTQLSWS* 274
            S PGS    +  GP      P   F PP LPP   H H +   P C PLP     ++W  
Sbjct: 1110 SPPGSRGSSIHSGPEELPTPPEPAFPPPPLPPWASHRHGVP-GPPCPPLP-----IAWP- 1162

Query: 275  VPSRFLITSSSS 310
                  +TSSSS
Sbjct: 1163 ------LTSSSS 1168

>gb|AAH10555.1| ZFP protein [Homo sapiens]
          Length = 276

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 14/36 (38%), Positives = 18/36 (49%)
 Frame = +2

Query: 137 PLSSVETPSMHFHPPLPPLTHHSHALELAPACTPLP 244
           PLS    P  H  PP  P THH  + + A   +P+P
Sbjct: 170 PLSGGSAPGAHLEPPYDPGTHHLPSGDFAQCTSPVP 205

>ref|NP_061121.1| zinc finger protein ZFP [Homo sapiens]
           gi|8099348|gb|AAF72104.1|AF154846_1 zinc finger protein
           [Homo sapiens]
          Length = 754

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 14/36 (38%), Positives = 18/36 (49%)
 Frame = +2

Query: 137 PLSSVETPSMHFHPPLPPLTHHSHALELAPACTPLP 244
           PLS    P  H  PP  P THH  + + A   +P+P
Sbjct: 170 PLSGGSAPGAHLEPPYDPGTHHLPSGDFAQCTSPVP 205

>gb|EAA42454.1| GLP_587_23152_28563 [Giardia lamblia ATCC 50803]
          Length = 1803

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 17/37 (45%), Positives = 20/37 (53%)
 Frame = +1

Query: 145  FCRDPLHALPSTTPASHSPLSCFGTCTCLHASPLRPH 255
            F  +PLH LPS TP + +P S     TCL A    PH
Sbjct: 1208 FSTEPLHQLPSLTPTNTAP-SFSADSTCLSARQTAPH 1243

>ref|NP_191591.2| bZIP protein [Arabidopsis thaliana] gi|16604629|gb|AAL24107.1|
           putative bZIP protein [Arabidopsis thaliana]
          Length = 796

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 21/48 (43%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
 Frame = +2

Query: 107 GSALRIVRDG-PLS-SVETPSMHFHPPLPPLTHHSHALELAPACTPLP 244
           GSAL     G PLS S +TP++  H P PPL+  S A  + P  +P P
Sbjct: 49  GSALSSFASGEPLSVSDQTPAVFLHTPPPPLSEQSPAKFVPPRFSPSP 96



EST assemble image


clone accession position
1 LCL067g04_r AV629857 1 358
2 MX244b05_r BP091776 45 315




Chlamydomonas reinhardtii
Kazusa DNA Research Institute