KCC007260A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC007260A_C01 KCC007260A_c01
aaagaataacacttcaagactggaaggtgtctttgttggggccttgttccttctgcagcg
ggacgctgaaccgcgtaaaaCATTTGGTAGCGTTGTGCAATTCTAGAACCATATAGTAGC
GATAGAGCGGCCATGGCGCTAGCTACAGCTGGCAAGGAGGGCGGCCACGATGCTGTCCGA
GAGCACCTTGAAACGCTGTTCCTGGGGCAGCAGAACGCGCATCTTCTCGATGATGTGATT
GTTGGTTTCGTAAACACAAACGAGTTCAAGCAGCGCCGATACACGGTTCAGGAGCTCATG
ACCTGCGCTCCATCTTGGGGAAGGCCGAAGCACTTCAAGTTTGTGCATGCTGAGATTCCG
TACCTGGCGACAGTGGACTTCTGGGAGGGATCACAAGTCGACTTTGTCGTCATCAGGCTC
CCGAACAACGGCTTCACCTACAGAAACCTGCCGTGCAACCTGCCGTGCATCATGTCGACG
GCGCCCGGTGCAGCGACACTCCGGGCGCACGCGCACAGCGGACGGCACGAGGAGGAGGAG
ATACATCGGCACCGGCACGACGGCTGGGTCGAGCTTGACGGCACGCTGCTGATGGAGTTT
TTCCCGGGCCTCGCCAAGAGCCTCGGCGCCAATTTCACCTCAATCCTTTTCTTCTACAAC
TACAAGCATCAGCGCATCGACATGCAGCTGTTCACGGACGACTCCTGCGCTCCGGGACTG
ATGCTCACCTTCGAGCTTGGGTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC007260A_C01 KCC007260A_c01
         (744 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    49  1e-04
pir||T31095 vitellogenin precursor - Oreochromis aureus gi|41028...    45  0.001
ref|NP_702674.1| hypothetical protein [Plasmodium falciparum 3D7...    44  0.003
ref|NP_046078.1| ORF H1525 [Halobacterium sp. NRC-1] gi|7484094|...    42  0.010
gb|AAP78680.1| MBCTL1 [Monosiga brevicollis]                           40  0.029

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 1/160 (0%)
 Frame = +2

Query: 260 TSSSSADTRFRSS*PALHLGEGRSTSSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTTASP 439
           TS SS  +   SS        G S ++ C     +    TS     ++  SSG+ +  S 
Sbjct: 18  TSCSSGTSSCSSS-----TSSGSSGTTSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTSS 72

Query: 440 TETCRATCRASCRRRPVQRHSGRTRTADGTRRRRYIGTGTTAGSSLTARC*WSFSRASPR 619
           T +  + C +SC      R S  T ++ GT       +GTT+ SS  + C  S S  S  
Sbjct: 73  TSSSNS-CTSSCSSGTSSRSSSTTSSSSGTSS---CSSGTTSSSSCASSCSSSTSSCSSG 128

Query: 620 ASAPIS-PQSFSSTTTSISASTCSCSRTTPALRD*CSPSS 736
            S+  S   S SS TTS S  T SCS    +     S SS
Sbjct: 129 TSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCASSSS 168

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 39/119 (32%), Positives = 59/119 (48%), Gaps = 2/119 (1%)
 Frame = +2

Query: 377 TSGRDHKSTLSSSGSRTTASPTETCRATCRASCRRRPVQRHSGRTRTADGTRRRRYIGTG 556
           TS R   +T SSSG+ + +S T T  ++C +SC        S  +  + GT   R   +G
Sbjct: 87  TSSRSSSTTSSSSGTSSCSSGT-TSSSSCASSC-------SSSTSSCSSGTSSCR---SG 135

Query: 557 TTAGSSLTARC*WSFSRASPRASAPISPQSFSSTT--TSISASTCSCSRTTPALRD*CS 727
           T++ SS T  C    S  S  AS+  S  S SSTT  +  ++S+ SC+ +  +    CS
Sbjct: 136 TSSCSSCTTSCSCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCS 194

 Score = 37.0 bits (84), Expect = 0.33
 Identities = 41/127 (32%), Positives = 58/127 (45%)
 Frame = +2

Query: 323 GRSTSSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTTASPTETCRATCRASCRRRPVQRHS 502
           G +TSS C          +SG    S+ +SSGS    S T +C ++C +SC        S
Sbjct: 9   GATTSSCCTT------SCSSGTSSCSSSTSSGS----SGTTSC-SSCTSSCS-------S 50

Query: 503 GRTRTADGTRRRRYIGTGTTAGSSLTARC*WSFSRASPRASAPISPQSFSSTTTSISAST 682
           G +  +  T       +GTT+ +S T+      S  S  +S      S SS+TTS S+ T
Sbjct: 51  GTSSCSSATSS---CSSGTTSCTSSTS------SSNSCTSSCSSGTSSRSSSTTSSSSGT 101

Query: 683 CSCSRTT 703
            SCS  T
Sbjct: 102 SSCSSGT 108

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 38/144 (26%), Positives = 52/144 (35%)
 Frame = -2

Query: 599 NSISSVPSSSTQPSCRCRCISSSSCRPLCACARSVAAPGAVDMMHGRLHGRFL*VKPLFG 420
           +S SS  SSS+  SC C   SSSSC   C+   S  +  A     G              
Sbjct: 158 SSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSG-------------- 203

Query: 419 SLMTTKSTCDPSQKSTVARYGISACTNLKCFGLPQDGAQVMSS*TVYRRCLNSFVFTKPT 240
              T+ S+C  S          S+ T+    G     +   SS      C +S   +   
Sbjct: 204 --TTSSSSCASS---------CSSSTSSSSSGTTSCSSGTTSSSCCTSSCSSSTSSSCSG 252

Query: 239 ITSSRRCAFCCPRNSVSRCSRTAS 168
            T+S  CA  C  +  S CS + S
Sbjct: 253 TTASSSCASSC-SSCASSCSSSTS 275

>pir||T31095 vitellogenin precursor - Oreochromis aureus gi|4102881|gb|AAD01615.1|
            vitellogenin precursor [Oreochromis aureus]
            gi|5725516|gb|AAD48085.1|AF072686_1 vitellogenin;
            phospholipoglycoprotein; yolk protein precursor
            [Oreochromis aureus]
          Length = 1788

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 45/169 (26%), Positives = 77/169 (44%), Gaps = 8/169 (4%)
 Frame = +2

Query: 254  TQTSSSSADTRFRSS*PALHLGEGRSTSSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTTA 433
            + +SSSS+ +  +SS  +      +S+SS          Q +S +  +S  SSS S +++
Sbjct: 1094 SSSSSSSSSSSNKSSSSSSRSSSSQSSSSRSHRSRSRKSQSSSSQSSRSPSSSSSSSSSS 1153

Query: 434  SPTETCRATCRASCRRRPVQRHSGRTRTAD--------GTRRRRYIGTGTTAGSSLTARC 589
            S   + R++ R+S R         RT+ AD         TR         +  SS +A  
Sbjct: 1154 SSRSSSRSSSRSSSRSSSRSSSRSRTKMADIVAPIITTSTRVSSSSSRSASNSSSSSASY 1213

Query: 590  *WSFSRASPRASAPISPQSFSSTTTSISASTCSCSRTTPALRD*CSPSS 736
              S S+   R+ +  S  S SS+++S S+S+ S S+ +   +   S SS
Sbjct: 1214 LLSSSKRRSRSRSSSSSSSSSSSSSSSSSSSSSSSKNSKRSKSSNSKSS 1262

>ref|NP_702674.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23498140|emb|CAD49108.1| hypothetical protein
           [Plasmodium falciparum 3D7]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 46/151 (30%), Positives = 68/151 (44%), Gaps = 2/151 (1%)
 Frame = +2

Query: 263 SSSSADTRFRSS*PALHLGEGRSTSSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTTASPT 442
           S++S  T  RS+  A      RS S+       +     S     ST S++ + +TAS  
Sbjct: 75  STASTSTSLRSASTASTASTLRSASTA------STASTASTASTASTASTASTASTASAA 128

Query: 443 ETCRATCRASCRRRPVQRHSGRTRTADGTRRRRYIGTGTTAGSSLTARC*WSFSRASP-- 616
            T R+   AS  R      +  TR+A      R   T +TA S+ TA    + S AS   
Sbjct: 129 STTRSASAASTTRS--ASAASTTRSASAASTTRSASTASTARSASTASTASAASAASTTR 186

Query: 617 RASAPISPQSFSSTTTSISASTCSCSRTTPA 709
            ASA  + +S S+ +T+ SAS  S +R+  A
Sbjct: 187 SASAASTTRSASAASTTRSASAASTTRSASA 217

 Score = 38.9 bits (89), Expect = 0.086
 Identities = 52/201 (25%), Positives = 77/201 (37%), Gaps = 7/201 (3%)
 Frame = +2

Query: 155 RRAATMLSESTLKRCSWGSRTRIFSMM*LLVS*TQTSSSSADTRFRSS*PALHLGEGRST 334
           R A+T  + STL+  S  S     S        T +++S+A T   +S  A      RS 
Sbjct: 84  RSASTASTASTLRSASTASTASTAS--------TASTASTASTASTAS-TASAASTTRSA 134

Query: 335 SSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTTASPTETCRATCRASCRRRPVQRHSGRTR 514
           S+    R  +    T      ST  S+ + +TA    T      AS         +  TR
Sbjct: 135 SAASTTRSASAASTTRSASAASTTRSASTASTARSASTASTASAASA--------ASTTR 186

Query: 515 TADGTRRRRYIGTGTTAGSSLTARC*WSFSRASPRASAPI-------SPQSFSSTTTSIS 673
           +A      R     +T  S+  A    S S AS  ++A         SP + +STT S S
Sbjct: 187 SASAASTTRSASAASTTRSASAASTTRSASAASTASTASTGSTSTTQSPSTSTSTTQSPS 246

Query: 674 ASTCSCSRTTPALRD*CSPSS 736
            ST +    + +     SPS+
Sbjct: 247 TSTSTTQSPSTSTSTTQSPST 267

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 49/185 (26%), Positives = 73/185 (38%), Gaps = 3/185 (1%)
 Frame = +2

Query: 155 RRAATMLSESTLKRCSWGSRTRIFSMM*LLVS*TQTSSSSADTRFRSS*PALHLGEGRST 334
           R A+T  + ST    S  S     S      + + T S+SA +  RS+  A      RS 
Sbjct: 96  RSASTASTASTASTASTASTASTASTASTASAASTTRSASAASTTRSASAA---STTRSA 152

Query: 335 SSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTT---ASPTETCRATCRASCRRRPVQRHSG 505
           S+    R  +           ST S++ + +T   AS   T R+   AS  R      + 
Sbjct: 153 SAASTTRSASTASTARSASTASTASAASAASTTRSASAASTTRSASAASTTRSASAASTT 212

Query: 506 RTRTADGTRRRRYIGTGTTAGSSLTARC*WSFSRASPRASAPISPQSFSSTTTSISASTC 685
           R+ +A  T      G+ +T  S  T+    +    S   S   SP + +STT S S  + 
Sbjct: 213 RSASAASTASTASTGSTSTTQSPSTSTS--TTQSPSTSTSTTQSPSTSTSTTQSPSTGST 270

Query: 686 SCSRT 700
           S S T
Sbjct: 271 SGSTT 275

>ref|NP_046078.1| ORF H1525 [Halobacterium sp. NRC-1] gi|7484094|pir||T08350
           hypothetical protein H1525 [imported] - Halobacterium
           sp.  (strain NRC-1) plasmid pNRC100
           gi|2822411|gb|AAC82917.1| ORF H1525 [Halobacterium sp.
           NRC-1]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 35/116 (30%), Positives = 48/116 (41%)
 Frame = +2

Query: 329 STSSLCMLRFRTWRQWTSGRDHKSTLSSSGSRTTASPTETCRATCRASCRRRPVQRHSGR 508
           + S+ C++     R + S   H  T +S     T S + T R + R    RRP +R    
Sbjct: 242 TVSTQCLVTTLAERSFRSMNRHSRTRASRRPMKTGSRSSTRRRSSRRRSNRRPRRRWMRT 301

Query: 509 TRTADGTRRRRYIGTGTTAGSSLTARC*WSFSRASPRASAPISPQSFSSTTTSISA 676
           TRT   TR +    TG TA  S       +F R  P  SA +   S+   T   SA
Sbjct: 302 TRTGSRTRAK----TGFTASPSNRRS---AFGRGKPNWSASVPRPSWERRTVGSSA 350

>gb|AAP78680.1| MBCTL1 [Monosiga brevicollis]
          Length = 916

 Score = 40.4 bits (93), Expect = 0.029
 Identities = 45/179 (25%), Positives = 73/179 (40%)
 Frame = +2

Query: 167 TMLSESTLKRCSWGSRTRIFSMM*LLVS*TQTSSSSADTRFRSS*PALHLGEGRSTSSLC 346
           T+ S S+    S  S T   S      S T TSS+S+ T   S+          STSS  
Sbjct: 235 TITSTSSTSSTSSSSSTSSTSSTSSTSSTTSTSSTSSTTSTSSTSSTSSTSSTSSTSSTS 294

Query: 347 MLRFRTWRQWTSGRDHKSTLSSSGSRTTASPTETCRATCRASCRRRPVQRHSGRTRTADG 526
                +    T+     S+ +S+ S ++ S T +  +T   S         +  T +   
Sbjct: 295 STSSTSSTSSTTSTSSTSSTTSTSSTSSTSSTSSTSSTSSTSSTSTSTSSTTTVTTSTTT 354

Query: 527 TRRRRYIGTGTTAGSSLTARC*WSFSRASPRASAPISPQSFSSTTTSISASTCSCSRTT 703
           T       T TT+ +S T+    + +  S   +A  S  + S+T+T+ + ST + S TT
Sbjct: 355 TTTTVTTSTTTTSTTSTTSTTTTTLT-TSTTTTATTSTTTTSTTSTTSTTSTTTTSSTT 412



EST assemble image


clone accession position
1 MX256e01_r BP092598 1 509
2 LC095h05_r AV625643 286 744




Chlamydomonas reinhardtii
Kazusa DNA Research Institute