Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC007233A_C01 KCC007233A_c01
(135 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa ... 31 5.1
ref|NP_078795.1| hypothetical protein FLJ13725 [Homo sapiens] gi... 31 5.1
>dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa (japonica
cultivar-group)] gi|22093600|dbj|BAC06896.1| putative
formin-like protein AHF1 [Oryza sativa (japonica
cultivar-group)]
Length = 960
Score = 31.2 bits (69), Expect = 5.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 128 PRNPRIRPVTHHTHTHGASLPIPVP 54
PRNP ++P THTHG P P P
Sbjct: 405 PRNPFVQPPPPPTHTHGPPPPPPPP 429
>ref|NP_078795.1| hypothetical protein FLJ13725 [Homo sapiens]
gi|10435826|dbj|BAB14678.1| unnamed protein product
[Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 5.1
Identities = 18/42 (42%), Positives = 23/42 (53%)
Frame = -1
Query: 126 SQPTHSTSHTPHTHAWC*PAYSSAVFVATSPKEASTRPS*HP 1
+ PTH TS +P T P+ S V ATSP +T P+ HP
Sbjct: 266 TSPTHKTSMSPPTTTSPTPSGMSLVQTATSPTHPTTSPT-HP 306
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,788,261
Number of Sequences: 1537769
Number of extensions: 2191255
Number of successful extensions: 9180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9148
length of database: 498,525,298
effective HSP length: 20
effective length of database: 467,769,918
effective search space used: 11226478032
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
