KCC007219A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC007219A_C01 KCC007219A_c01
gacgtcaaagggctcaaccaggacccagagaaaattaagatgctgatgaagcgcgacccc
aagttcatcgagcgcctgatAACGCAACTTGACAAGAATATGCACAAGATGATGCTACAA
AAGAAGGCTAAGCTGGATGAAATTGCTCAAGCAGAGAAGGAAATAGAGACGATTAACAGC
CAAATCAATGTCGCACATCACGCCAAACTTAGAGCGATTAGAGGGGTCCATCAAGAGCAA
GCTGGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAGGTTAAGT
GACCTGTGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCTGGCACACGGCCGGCAAGC
TCTACCGCGCAACGGCTGACGCAACGAATGGATGGAGGCCCGGGGATTCTCCTCCTCCAC
ACCCACCACAACACTGCTCAAAGGCTGGTGCCGCCATGGTGACGCTGGGGGCCACAGGCT
GCGGTGGTGCTGGAGCACGATGTCCACTACCGCAGCGGCAAAGCCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC007219A_C01 KCC007219A_c01
         (527 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P96192|YOHI_AZOVI Hypothetical 33.2 kDa protein in IBPB 5'reg...    37  0.12
ref|XP_117247.2| similar to hypothetical protein 7420700F21 [Hom...    37  0.20
gb|AAN85373.1| KAR3 [Candida albicans]                                 35  0.46
gb|AAN71442.1| RE58243p [Drosophila melanogaster]                      35  0.59
ref|NP_608770.1| CG3304-PA [Drosophila melanogaster] gi|22945321...    35  0.59

>sp|P96192|YOHI_AZOVI Hypothetical 33.2 kDa protein in IBPB 5'region
           gi|1850794|emb|CAA72146.1| Yoh1 protein [Azotobacter
           vinelandii]
          Length = 309

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 34/114 (29%), Positives = 46/114 (39%), Gaps = 1/114 (0%)
 Frame = +1

Query: 82  TQLDKNMHKMML-QKKAKLDEIAQAEKEIETINSQINVAHHAKLRAIRGVHQEQAGSCET 258
           T+    MH  +L    A L E A    E+      +N    AK    RG     A  C +
Sbjct: 59  TRAGTPMHLQLLGSDPACLAENAALAAELGAPAIDLNFGCPAKTSTARG-----ADGCCS 113

Query: 259 KSSSSVMPSSPRLSDL*GRGAGTHPEVPGTRPASSTAQRLTQRMDGGPGILLLH 420
            S +  MPSS R +    R AG   + PG RPA          ++GG   L++H
Sbjct: 114 TSRNCCMPSSARCAGPCRRCAGDRQDAPGVRPARGRPGVRRALVEGGVAHLVVH 167

>ref|XP_117247.2| similar to hypothetical protein 7420700F21 [Homo sapiens]
          Length = 119

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 526 GLCRCGSGHRAPAPPQPVAPSVTMAAPAFEQCCGGCGGGESPGLHPFVASAVAR*SLPAV 347
           G+C C         P    P V + AP    C G CG     GL P    A     +PA+
Sbjct: 13  GICVC---------PCLSGPGVILGAPLASSCAGACGTSFPDGLTPEGTQASGDKDIPAI 63

Query: 346 CQGL-LDECP 320
            QGL L+E P
Sbjct: 64  NQGLILEETP 73

>gb|AAN85373.1| KAR3 [Candida albicans]
          Length = 687

 Score = 35.4 bits (80), Expect = 0.46
 Identities = 24/84 (28%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
 Frame = +1

Query: 1   DVKGLNQDPEKIKMLMKRDPKFIERLITQLDKNMHKMMLQKKAKL-DEIAQAEKEIETIN 177
           ++  LN++  KIK   K     + R + QL ++ HK  L    ++ D+I   +KEI  IN
Sbjct: 180 EISNLNKEINKIKSDRKNTESDLNRRLIQLKEDQHKQELMMVGRVNDDINNMKKEIADIN 239

Query: 178 SQINVAHHAKLRAIRGVHQEQAGS 249
           S +  +   ++  I+ V  E A +
Sbjct: 240 SLLE-SKTKQIELIKSVEIEGASN 262

>gb|AAN71442.1| RE58243p [Drosophila melanogaster]
          Length = 852

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
 Frame = +1

Query: 115 LQKKAKLDEIAQAEK-------------EIETINSQINVAHHAKLRAIRGVHQEQAGSCE 255
           LQ++++ +E  QAE              E  TI S  N +   KL  I    QE AGS E
Sbjct: 114 LQQQSQPEEELQAEAPGSNAGDRRDSITEEITITSTTNSSQSTKLLTI----QEAAGSFE 169

Query: 256 TKSSSSVMPSSPRLSDL*GRGAGTHPEVPGTRPASSTAQRLTQ 384
             S S+V  SS +++     G+      PG    + +  RLTQ
Sbjct: 170 QSSVSAVSTSSKQIASTTAGGSPPAAAAPGANEFNGSVLRLTQ 212

>ref|NP_608770.1| CG3304-PA [Drosophila melanogaster] gi|22945321|gb|AAF51119.2|
           CG3304-PA [Drosophila melanogaster]
          Length = 1271

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
 Frame = +1

Query: 115 LQKKAKLDEIAQAEK-------------EIETINSQINVAHHAKLRAIRGVHQEQAGSCE 255
           LQ++++ +E  QAE              E  TI S  N +   KL  I    QE AGS E
Sbjct: 96  LQQQSQPEEELQAEAPGSNAGDRRDSITEEITITSTTNSSQSTKLLTI----QEAAGSFE 151

Query: 256 TKSSSSVMPSSPRLSDL*GRGAGTHPEVPGTRPASSTAQRLTQ 384
             S S+V  SS +++     G+      PG    + +  RLTQ
Sbjct: 152 QSSVSAVSTSSKQIASTTAGGSPPAAAAPGANEFNGSVLRLTQ 194



EST assemble image


clone accession position
1 LC092g03_r AV625449 1 347
2 MX253h11_r BP092422 167 527




Chlamydomonas reinhardtii
Kazusa DNA Research Institute