Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC006854A_C01 KCC006854A_c01
(485 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00123836.1| COG0730: Predicted permeases [Pseudomonas syr... 36 0.21
sp|Q9ES64|US1C_MOUSE Harmonin (Usher syndrome 1C protein homolog... 36 0.21
gb|AAM44072.1| harmonin isoform b2 [Mus musculus] 36 0.21
ref|NP_250515.1| conserved hypothetical protein [Pseudomonas aer... 36 0.28
ref|NP_792527.1| membrane protein, putative [Pseudomonas syringa... 35 0.37
>ref|ZP_00123836.1| COG0730: Predicted permeases [Pseudomonas syringae pv. syringae
B728a]
Length = 316
Score = 36.2 bits (82), Expect = 0.21
Identities = 28/78 (35%), Positives = 34/78 (42%), Gaps = 7/78 (8%)
Frame = -1
Query: 326 CMPRR-------FGLIIHLSRLGRTAWAMISAVCPFLAGFKHTIVGNGTILTSNKLCVVL 168
C PR F L + L+ L I AV F+AGF I G G +LT+ L
Sbjct: 48 CRPRHKPSATMPFELSVDLTTLA------ILAVVAFIAGFIDAIAGGGGLLTTPALMTAG 101
Query: 167 TQPHWRLQTCALGTTLGS 114
PH L T L +T GS
Sbjct: 102 LPPHLVLGTNKLSSTFGS 119
>sp|Q9ES64|US1C_MOUSE Harmonin (Usher syndrome 1C protein homolog) (PDZ domain-containing
protein) gi|10086257|gb|AAG12458.1|AF228925_1 harmonin
isoform b3 [Mus musculus]
Length = 910
Score = 36.2 bits (82), Expect = 0.21
Identities = 29/104 (27%), Positives = 39/104 (36%)
Frame = +1
Query: 70 LPHPPDPPSSMFVPQEPSVVPSAHVCSLQCGWVSTTHSLFDVKMVPFPTIVCLKPARNGQ 249
+PHPP S VP P + S HV S WV T P + + P +
Sbjct: 564 MPHPPSVNSPSKVPAPPVLPSSGHVSSSSSPWVQRT-----------PPPIPIPPPPSIP 612
Query: 250 TADIIAQAVRPSLLR*IINPKRLGMHRTPTSPPSATSDPYIDST 381
T D+ PS L + LG H T P +D + +T
Sbjct: 613 TQDLTPTRPLPSALE-----EALGNHPFRTGDPGHPADDWEANT 651
>gb|AAM44072.1| harmonin isoform b2 [Mus musculus]
Length = 859
Score = 36.2 bits (82), Expect = 0.21
Identities = 29/104 (27%), Positives = 39/104 (36%)
Frame = +1
Query: 70 LPHPPDPPSSMFVPQEPSVVPSAHVCSLQCGWVSTTHSLFDVKMVPFPTIVCLKPARNGQ 249
+PHPP S VP P + S HV S WV T P + + P +
Sbjct: 564 MPHPPSVNSPSKVPAPPVLPSSGHVSSSSSPWVQRT-----------PPPIPIPPPPSIP 612
Query: 250 TADIIAQAVRPSLLR*IINPKRLGMHRTPTSPPSATSDPYIDST 381
T D+ PS L + LG H T P +D + +T
Sbjct: 613 TQDLTPTRPLPSALE-----EALGNHPFRTGDPGHPADDWEANT 651
>ref|NP_250515.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11347837|pir||B83419 conserved hypothetical protein
PA1824 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9947809|gb|AAG05213.1|AE004608_12 conserved
hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 259
Score = 35.8 bits (81), Expect = 0.28
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -1
Query: 263 MISAVCPFLAGFKHTIVGNGTILTSNKLCVVLTQPHWRLQTCALGTTLGS 114
+I AV FLAGF I G G +LT L PH L T L +T G+
Sbjct: 13 IILAVVAFLAGFIDAIAGGGGLLTIPALLTAGVPPHLALGTNKLSSTFGA 62
>ref|NP_792527.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000] gi|28853153|gb|AAO56222.1| membrane protein,
putative [Pseudomonas syringae pv. tomato str. DC3000]
Length = 259
Score = 35.4 bits (80), Expect = 0.37
Identities = 21/49 (42%), Positives = 25/49 (50%)
Frame = -1
Query: 260 ISAVCPFLAGFKHTIVGNGTILTSNKLCVVLTQPHWRLQTCALGTTLGS 114
I AV F+AGF I G G +LT+ L PH L T L +T GS
Sbjct: 14 ILAVVAFVAGFIDAIAGGGGLLTTPALMTAGLPPHLVLGTNKLSSTFGS 62
