KCC006439A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC006439A_C01 KCC006439A_c01
cttacaaccacgattacttgtcaagccgaacgttgaagggcgacgtagaactgttacttg
acgattttctggagcacgggGCGCCGAGAATGAAGCTGGAGGTTGTTTCACGCTCGGGGA
GGTCCATCGCCACGCTGGACGTGAACCCAGACTCGACCGTAGCTGAACTGAAGAAGAAGT
TTCATGGGCTCAAGAAGACCTATTACCCAGCGCGGCAGCGGTTTGCGCTGCCGGTGAAGG
CCGGGGAGACGCGCGGCCAGGTGCTGTCCGACGACAGCAAGCGGCTTAGCGACTACGGCC
TCGCCGAGGGCGGCAAGCTAGAGTTCAAGGACCTGGGCCCGCAGATCGGCTACAGCACTG
TGTTCTTCTGGGAGTACTTCGGGCCGCTGGTGGTGTACCCGCTGTTCTTCTTCCTGCCGC
AGTACCTGTACCCGCATATCAAGGCGCCCGCCGGCGGCACCCAGCACGCGCTGGTGCAGA
AGCTGGCGTGCGCCTACTGGTGCTTCCACTACGCCAAGCGCATCGTGGAGACCTTCACTG
TGCACAAGTTTGGGCACGCCACCATGCCCATCTTCAACCTGTTCAAGAACTGCGGCTACT
ACTGGGGCTACGCTGCCTACGTGTCCTACTTTGTCAACCACCCGCTGTACACCGCGCCCA
ACCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC006439A_C01 KCC006439A_c01
         (664 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_191096.1| 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid ...   189  2e-47
dbj|BAB03604.1| putative glycoprotein [Oryza sativa (japonica cu...   189  3e-47
emb|CAD56504.1| steroid 5-alpha reductase [Cicer arietinum]           181  9e-45
ref|NP_495430.1| steroid Alpha ReducTase family, 3-oxo-5-alpha-s...   156  2e-37
gb|AAP36986.1| Homo sapiens glycoprotein, synaptic 2 [synthetic ...   151  1e-35

>ref|NP_191096.1| 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase)
           family [Arabidopsis thaliana] gi|11281609|pir||T47675
           glycoprotein-like - Arabidopsis thaliana
           gi|7076779|emb|CAB75894.1| glycoprotein-like
           [Arabidopsis thaliana] gi|17473725|gb|AAL38312.1|
           glycoprotein-like [Arabidopsis thaliana]
           gi|20148509|gb|AAM10145.1| glycoprotein-like
           [Arabidopsis thaliana] gi|21594270|gb|AAM65988.1|
           synaptic glycoprotein SC2-like protein [Arabidopsis
           thaliana]
          Length = 310

 Score =  189 bits (481), Expect = 2e-47
 Identities = 94/195 (48%), Positives = 125/195 (63%), Gaps = 7/195 (3%)
 Frame = +3

Query: 90  MKLEVVSRSGRSI--ATLDVNPDSTVAELKKKFHGLKKTYYPARQRFALPVKAGETRGQV 263
           MK+ VVSRSGR +  A LD+   +TVA+L++ FH   K +YP+RQR  LPV  G     V
Sbjct: 1   MKVTVVSRSGREVLKAPLDLPDSATVADLQEAFHKRAKKFYPSRQRLTLPVTPGSKDKPV 60

Query: 264 LSDDSKRLSDYGLAEGGKLE--FKDLGPQIGYSTVFFWEYFGPLVVYPLFFFLPQYLYPH 437
           + +  K L +Y       L   FKDLG Q+ Y T+FF+EY GPL++YP+F++ P Y +  
Sbjct: 61  VLNSKKSLKEYCDGNNNSLTVVFKDLGAQVSYRTLFFFEYLGPLLIYPVFYYFPVYKF-- 118

Query: 438 IKAPAGGTQHAL---VQKLACAYWCFHYAKRIVETFTVHKFGHATMPIFNLFKNCGYYWG 608
                G  +  +   VQ  A  YWCFHY KRI+ETF VH+F HAT PI N+F+NC YYW 
Sbjct: 119 ----LGYGEDCVIHPVQTYAMYYWCFHYFKRILETFFVHRFSHATSPIGNVFRNCAYYWS 174

Query: 609 YAAYVSYFVNHPLYT 653
           + AY++Y+VNHPLYT
Sbjct: 175 FGAYIAYYVNHPLYT 189

>dbj|BAB03604.1| putative glycoprotein [Oryza sativa (japonica cultivar-group)]
           gi|13872906|dbj|BAB44013.1| putative glycoprotein [Oryza
           sativa (japonica cultivar-group)]
          Length = 313

 Score =  189 bits (480), Expect = 3e-47
 Identities = 92/192 (47%), Positives = 125/192 (64%), Gaps = 4/192 (2%)
 Frame = +3

Query: 90  MKLEVVSRSGRSIAT--LDVNPDSTVAELKKKFHGLKKTYYPARQRFALPVKAGETRGQV 263
           MK+ VVSRSGR +    +++   + VA+L+   +   K YYPARQR  LP++ G++   V
Sbjct: 1   MKVSVVSRSGREVVRGGVELKDSAKVADLQDAIYAKTKKYYPARQRLTLPIQPGKSGKPV 60

Query: 264 LSDDSKRLSDYGLAEGGKLE--FKDLGPQIGYSTVFFWEYFGPLVVYPLFFFLPQYLYPH 437
           +      LS+Y     G L   FKDLGPQ+ YST+FF+EY GPL++YP+F++LP Y Y  
Sbjct: 61  VLSAKASLSEYCEKGSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFG 120

Query: 438 IKAPAGGTQHALVQKLACAYWCFHYAKRIVETFTVHKFGHATMPIFNLFKNCGYYWGYAA 617
            +       H  VQ  A  YWCFHY KRI+ETF VH+F HAT P+ N+F+NC YYW + A
Sbjct: 121 YEGER--VMHP-VQTYAMYYWCFHYFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGA 177

Query: 618 YVSYFVNHPLYT 653
           Y++Y+ NHPLYT
Sbjct: 178 YIAYYCNHPLYT 189

>emb|CAD56504.1| steroid 5-alpha reductase [Cicer arietinum]
          Length = 309

 Score =  181 bits (459), Expect = 9e-45
 Identities = 92/190 (48%), Positives = 127/190 (66%), Gaps = 4/190 (2%)
 Frame = +3

Query: 90  MKLEVVSRSGRSIAT--LDVNPDSTVAELKKKFHGLKKTYYPARQRFALPVKAGETRGQV 263
           MKL +VSRSGR I    + ++  +TVA+L++  +   K + P+RQR  LPV+ G     V
Sbjct: 1   MKLTLVSRSGREIVKGGIQLSDSATVADLQEAIYKRIKKH-PSRQRLTLPVQPGSKERPV 59

Query: 264 LSDDSKRLSDY--GLAEGGKLEFKDLGPQIGYSTVFFWEYFGPLVVYPLFFFLPQYLYPH 437
           + +  K L+DY  G +E   L FKDLGPQ+ Y T+FF+EY GPL++YP+F++LP Y Y  
Sbjct: 60  VLNYKKSLNDYTSGNSETLTLVFKDLGPQVSYRTLFFFEYLGPLLLYPVFYYLPVYQYFG 119

Query: 438 IKAPAGGTQHALVQKLACAYWCFHYAKRIVETFTVHKFGHATMPIFNLFKNCGYYWGYAA 617
            K   G      VQ  A  YWCFHYAKRI+ETF VH+F HAT P+ N+F+NC YYW + +
Sbjct: 120 YK---GERVIQPVQTYALYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCAYYWCFGS 176

Query: 618 YVSYFVNHPL 647
           Y++Y+VNHP+
Sbjct: 177 YIAYYVNHPI 186

>ref|NP_495430.1| steroid Alpha ReducTase family, 3-oxo-5-alpha-steroid
           4-dehydrogenase similar to vertebrate synaptic
           glycoprotein SC2 (35.1 kD) (art-1) [Caenorhabditis
           elegans] gi|7206593|gb|AAF39753.1| Steroid alpha
           reductase family protein 1 [Caenorhabditis elegans]
          Length = 308

 Score =  156 bits (395), Expect = 2e-37
 Identities = 88/185 (47%), Positives = 118/185 (63%), Gaps = 2/185 (1%)
 Frame = +3

Query: 111 RSGRSIATLD-VNPDSTVAELKKKFHGLKKTYYPARQRFALPVKAGETRGQVLSDDSKRL 287
           R+   I TL+ ++   T+  +KK+    +K      +R AL V   E +G+ L+DD K L
Sbjct: 12  RTDNLIITLEGISGSETIKAIKKRI--AQKKLKLTEERQALRV---EPKGKPLADDQK-L 65

Query: 288 SDYGLA-EGGKLEFKDLGPQIGYSTVFFWEYFGPLVVYPLFFFLPQYLYPHIKAPAGGTQ 464
           SD GL+ +   L  +DLGPQI + TVF  EY GPL VYPLF+  P ++Y   +A    T 
Sbjct: 66  SDLGLSSQKAVLYVRDLGPQIAWKTVFMAEYAGPLFVYPLFYLRPTFIYG--QAAVNATM 123

Query: 465 HALVQKLACAYWCFHYAKRIVETFTVHKFGHATMPIFNLFKNCGYYWGYAAYVSYFVNHP 644
           H  VQ +A   W FHYAKR+ ET  +H+FG++TMP FNL KNC YYWG+AA+V+YFVNHP
Sbjct: 124 HPAVQ-IAFFAWSFHYAKRLFETQFIHRFGNSTMPQFNLVKNCSYYWGFAAFVAYFVNHP 182

Query: 645 LYTAP 659
           L+T P
Sbjct: 183 LFTPP 187

>gb|AAP36986.1| Homo sapiens glycoprotein, synaptic 2 [synthetic construct]
          Length = 309

 Score =  151 bits (381), Expect = 1e-35
 Identities = 77/173 (44%), Positives = 106/173 (60%)
 Frame = +3

Query: 141 VNPDSTVAELKKKFHGLKKTYYPARQRFALPVKAGETRGQVLSDDSKRLSDYGLAEGGKL 320
           V P +T+AE+K  F      +YPARQ   L     + +G+ L D+   L    +     L
Sbjct: 23  VEPHATIAEIKNLFTKTHPQWYPARQSLRL-----DPKGKSLKDEDV-LQKLPVGTTATL 76

Query: 321 EFKDLGPQIGYSTVFFWEYFGPLVVYPLFFFLPQYLYPHIKAPAGGTQHALVQKLACAYW 500
            F+DLG QI + TVF  EY GPL +Y LF+F   ++Y H K     ++H +V  LAC   
Sbjct: 77  YFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGH-KYDFTSSRHTVVH-LACICH 134

Query: 501 CFHYAKRIVETFTVHKFGHATMPIFNLFKNCGYYWGYAAYVSYFVNHPLYTAP 659
            FHY KR++ET  VH+F H TMP+ N+FKNC YYWG+AA+++Y++NHPLYT P
Sbjct: 135 SFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPP 187



EST assemble image


clone accession position
1 LC002e10_r AV619010 1 514
2 MX250e06_r BP092159 298 664




Chlamydomonas reinhardtii
Kazusa DNA Research Institute