KCC005541A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC005541A_C01 KCC005541A_c01
caaagtataatttctatcaccgCTTCCTACATCCAAAATGCTCCTACAACAGCGACTGGC
ATCGCGGCCTGCCAGGGCTGCTGGCAGCAGGCGCGGGCGGCCCCTGCCCTTCCATGGGCA
TGCGCCTGGTCTCCCACGTGGCCGCTGCCTGCGTGGATGTGTTGTGCAGATGTGCTGCCA
TGTGGCCTCCACCTCTGGCTCCTCTGGCCTGGTCTGGACTGTGCCTGCCCAACATCGTGT
CGCTGCTGCGCTGCACGTGGCCTCATCCAGGAGGTGACCAACACTGAGGAGCTGGAGCGT
GCCGCCGCCGCCGGCCGCCTGTCCGTGTACTGCGGCTTCGACCCCACCGCCGACTCGCTG
CACCTGGGCAACCTGCTGGGCATTGTGGTGCTGGCCTGGTTCCAGAGGTGCGGCCACGAG
CCGGTCGCTCTGCTGGGCGGCGCCACGGGGCGTGTGGGCGACCCCAGCGGCCGCAGCACG
GAGCGCCCCGTGTTGAGCGAGGAGCAGATTGAGCACAACGTCACAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC005541A_C01 KCC005541A_c01
         (526 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_186915.1| tyrosyl-tRNA synthetase -related [Arabidopsis t...   119  2e-26
dbj|BAB64064.1| putative tyrosyl-tRNA synthetase [Oryza sativa (...   118  4e-26
ref|XP_311148.1| ENSANGP00000004765 [Anopheles gambiae] gi|21294...   103  1e-21
ref|NP_693139.1| tyrosyl-tRNA synthetase [Oceanobacillus iheyens...   102  4e-21
ref|NP_812142.1| tyrosyl-tRNA synthetase [Bacteroides thetaiotao...   101  5e-21

>ref|NP_186915.1| tyrosyl-tRNA synthetase -related [Arabidopsis thaliana]
           gi|6957729|gb|AAF32473.1| putative tyrosyl-tRNA
           synthetase [Arabidopsis thaliana]
          Length = 511

 Score =  119 bits (299), Expect = 2e-26
 Identities = 57/92 (61%), Positives = 72/92 (77%), Gaps = 3/92 (3%)
 Frame = +1

Query: 256 RGLIQEVTNTEELERAAAAGR---LSVYCGFDPTADSLHLGNLLGIVVLAWFQRCGHEPV 426
           RGL++ +T+ E L  A +  +   L VYCGFDPTA+SLHLGNLLGI+VL+WFQRCGH+ V
Sbjct: 92  RGLLESITS-ENLRSACSDPKVAPLRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAV 150

Query: 427 ALLGGATGRVGDPSGRSTERPVLSEEQIEHNV 522
            L+GGATGRVGDPSG+S ERP L  + +E N+
Sbjct: 151 GLIGGATGRVGDPSGKSLERPELDADTLEKNI 182

>dbj|BAB64064.1| putative tyrosyl-tRNA synthetase [Oryza sativa (japonica
           cultivar-group)]
          Length = 497

 Score =  118 bits (296), Expect = 4e-26
 Identities = 59/89 (66%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +1

Query: 256 RGLIQEVTNTEELERAAAAGR-LSVYCGFDPTADSLHLGNLLGIVVLAWFQRCGHEPVAL 432
           RGL+ E T +E L  A+A+ R L  YCGFDPTA+SLHLGNLLG+VVL+WF+RCGH  VAL
Sbjct: 56  RGLV-EATTSESLGSASASPRELKAYCGFDPTAESLHLGNLLGLVVLSWFRRCGHNAVAL 114

Query: 433 LGGATGRVGDPSGRSTERPVLSEEQIEHN 519
           +GGATGRVGDPSG+S ERP L    +E N
Sbjct: 115 VGGATGRVGDPSGKSAERPELDLAAVETN 143

>ref|XP_311148.1| ENSANGP00000004765 [Anopheles gambiae] gi|21294470|gb|EAA06615.1|
           ENSANGP00000004765 [Anopheles gambiae str. PEST]
          Length = 448

 Score =  103 bits (257), Expect = 1e-21
 Identities = 51/93 (54%), Positives = 68/93 (72%), Gaps = 3/93 (3%)
 Frame = +1

Query: 256 RGLIQEVTNTEELERAAA---AGRLSVYCGFDPTADSLHLGNLLGIVVLAWFQRCGHEPV 426
           RG IQ+V   E +++A++   +   +VY GFDPTA+SLH+GNLL ++ L   QR GH+P+
Sbjct: 23  RGFIQDVFPAETIDKASSMLGSTCQTVYAGFDPTANSLHVGNLLVLIGLLHTQRAGHQPI 82

Query: 427 ALLGGATGRVGDPSGRSTERPVLSEEQIEHNVT 525
           AL+GGATG +GDPSGR TER  L  E +EHNVT
Sbjct: 83  ALVGGATGLIGDPSGRKTERQQLETEAVEHNVT 115

>ref|NP_693139.1| tyrosyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
           gi|22777903|dbj|BAC14174.1| tyrosyl-tRNA synthetase
           (tyrosine-tRNA ligase) [Oceanobacillus iheyensis HTE831]
          Length = 428

 Score =  102 bits (253), Expect = 4e-21
 Identities = 46/91 (50%), Positives = 68/91 (74%)
 Frame = +1

Query: 253 ARGLIQEVTNTEELERAAAAGRLSVYCGFDPTADSLHLGNLLGIVVLAWFQRCGHEPVAL 432
           +RGLI + T+ E LE+     ++++YCGFDPTADSLH+G+L+ + +L  FQ+ GH+P+AL
Sbjct: 9   SRGLIHQTTDRERLEKHLQNNQVTLYCGFDPTADSLHIGHLVPLTMLKRFQQAGHKPIAL 68

Query: 433 LGGATGRVGDPSGRSTERPVLSEEQIEHNVT 525
           +GG TG +GDPSGRS+ER  L+  ++ H  T
Sbjct: 69  VGGGTGMIGDPSGRSSERS-LNAPEVVHGFT 98

>ref|NP_812142.1| tyrosyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
           gi|29340544|gb|AAO78336.1| tyrosyl-tRNA synthetase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 430

 Score =  101 bits (252), Expect = 5e-21
 Identities = 47/89 (52%), Positives = 67/89 (74%), Gaps = 1/89 (1%)
 Frame = +1

Query: 256 RGLIQEVT-NTEELERAAAAGRLSVYCGFDPTADSLHLGNLLGIVVLAWFQRCGHEPVAL 432
           RG++Q++   TEEL       +++ Y G DPTADSLH+G+L G+++L   QRCGH+P+AL
Sbjct: 10  RGMLQDIMPGTEELLNKE---QVTAYLGIDPTADSLHIGHLCGVMILRHLQRCGHKPLAL 66

Query: 433 LGGATGRVGDPSGRSTERPVLSEEQIEHN 519
           +GGATG +GDPSG+S ER +L+EE + HN
Sbjct: 67  IGGATGMIGDPSGKSAERNLLNEETLRHN 95



EST assemble image


clone accession position
1 HCL008d11_r AV639994 1 526
2 MX229f05_r BP090821 23 280




Chlamydomonas reinhardtii
Kazusa DNA Research Institute