KCC005519A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC005519A_C01 KCC005519A_c01
cgaggaccaggacgagcCCGAGATCCCTCAGGAGTTCATGTTTGAGTCCGAGGGCGTCAT
CATGGACCCCTCCATCCTCATGTTCGCGCAGCAGTAGCAGCGCGCGCAGGGCCGCTCCGG
CCGCGCCAAGACGCTCATCTTCAGCGACGACCGCGGCCGCTACATCAAGCCCATGCTGCC
CAAGGGTGACAAGGTCAAGCGCCTGGCAGTGGACGCCACGCTTCGCGCCGCCGCGCCCTA
CCAGAAGATTCGCCGGCAGCAGGCCATCAGCGAGGGCAAGGTGCAGCGCAAGGTGTACGT
GGACAAGCCAGACATGCGCTCCAAGAAGCTGGCCCGCAAGGCCGGTGCGCTGGTGATTTT
TGTTGTGGACGCGTCCGGCTCCATGGCTCTGAACCGCATGAGCGCCGCCAAGGGCGCCTG
CATGCGCCTGCTGGCTGAGTCGTACACCAGCCGCGACCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC005519A_C01 KCC005519A_c01
         (460 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O24133|CHLD_TOBAC Magnesium-chelatase subunit chlD, chloropla...   206  8e-53
sp|O22437|CHLD_PEA Magnesium-chelatase subunit chlD, chloroplast...   204  4e-52
pir||B86218 protein T27G7.20 [imported] - Arabidopsis thaliana g...   204  5e-52
ref|NP_563821.2| magnesium-chelatase, subunit chlD, chloroplast ...   204  5e-52
gb|AAL24388.1| similar to magnesium-chelatase subunit ChlD precu...   204  5e-52

>sp|O24133|CHLD_TOBAC Magnesium-chelatase subunit chlD, chloroplast precursor
           (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
           D) gi|7489191|pir||T02925 protoporphyrin IX magnesium
           chelatase (EC 4.99.1.-) chain chlD - common tobacco
           gi|2239151|emb|CAA71128.1| CHLD magnesium chelatase
           subunit [Nicotiana tabacum]
          Length = 758

 Score =  206 bits (525), Expect = 8e-53
 Identities = 106/152 (69%), Positives = 130/152 (84%)
 Frame = +2

Query: 5   DQDEPEIPQEFMFESEGVIMDPSILMFAQQ*QRAQGRSGRAKTLIFSDDRGRYIKPMLPK 184
           +Q +P++P EF+F++EG ++D  +L FAQQ QR +G++GRAK +IFS+DRGRYIKPMLPK
Sbjct: 445 EQQQPQVPDEFIFDAEGGLVDEKLLFFAQQAQRRKGKAGRAKKVIFSEDRGRYIKPMLPK 504

Query: 185 GDKVKRLAVDATLRAAAPYQKIRRQQAISEGKVQRKVYVDKPDMRSKKLARKAGALVIFV 364
           G  VKRLAVDATLRAAAPYQK+RR + I +    RKVYV+K DMR+K++ARKAGALVIFV
Sbjct: 505 GP-VKRLAVDATLRAAAPYQKLRRAKDIQK---TRKVYVEKTDMRAKRMARKAGALVIFV 560

Query: 365 VDASGSMALNRMSAAKGACMRLLAESYTSRDQ 460
           VDASGSMALNRM  AKGA ++LLAESYTSRDQ
Sbjct: 561 VDASGSMALNRMQNAKGAALKLLAESYTSRDQ 592

>sp|O22437|CHLD_PEA Magnesium-chelatase subunit chlD, chloroplast precursor
           (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
           D) gi|7488839|pir||T06249 protoporphyrin IX magnesium
           chelatase (EC 4.99.1.-) D chain - garden pea
           gi|2318117|gb|AAB72194.1| Mg-chelatase subunit D [Pisum
           sativum]
          Length = 754

 Score =  204 bits (519), Expect = 4e-52
 Identities = 104/152 (68%), Positives = 132/152 (86%)
 Frame = +2

Query: 5   DQDEPEIPQEFMFESEGVIMDPSILMFAQQ*QRAQGRSGRAKTLIFSDDRGRYIKPMLPK 184
           +Q + ++P+EF+F++EG ++D  +L FAQQ QR +G++GRAK +IFS+DRGRYIKPMLPK
Sbjct: 440 EQQQDQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGKAGRAKNVIFSEDRGRYIKPMLPK 499

Query: 185 GDKVKRLAVDATLRAAAPYQKIRRQQAISEGKVQRKVYVDKPDMRSKKLARKAGALVIFV 364
           G  VKRLAVDATLRAAAPYQK+RR++   + + +RKVYV+K DMR+K++ARKAGALVIFV
Sbjct: 500 GP-VKRLAVDATLRAAAPYQKLRREK---DTENRRKVYVEKTDMRAKRMARKAGALVIFV 555

Query: 365 VDASGSMALNRMSAAKGACMRLLAESYTSRDQ 460
           VDASGSMALNRM  AKGA ++LLAESYTSRDQ
Sbjct: 556 VDASGSMALNRMQNAKGAALKLLAESYTSRDQ 587

>pir||B86218 protein T27G7.20 [imported] - Arabidopsis thaliana
           gi|6664313|gb|AAF22895.1|AC006932_12 T27G7.20
           [Arabidopsis thaliana]
          Length = 778

 Score =  204 bits (518), Expect = 5e-52
 Identities = 105/152 (69%), Positives = 131/152 (86%)
 Frame = +2

Query: 5   DQDEPEIPQEFMFESEGVIMDPSILMFAQQ*QRAQGRSGRAKTLIFSDDRGRYIKPMLPK 184
           +Q + +IP+EF+F++EG ++D  +L FAQQ Q+ +G++GRAK +IFS+DRGRYIKPMLPK
Sbjct: 463 EQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPK 522

Query: 185 GDKVKRLAVDATLRAAAPYQKIRRQQAISEGKVQRKVYVDKPDMRSKKLARKAGALVIFV 364
           G  VKRLAVDATLRAAAPYQK+RR++ IS     RKV+V+K DMR+K++ARKAGALVIFV
Sbjct: 523 GP-VKRLAVDATLRAAAPYQKLRREKDISG---TRKVFVEKTDMRAKRMARKAGALVIFV 578

Query: 365 VDASGSMALNRMSAAKGACMRLLAESYTSRDQ 460
           VDASGSMALNRM  AKGA ++LLAESYTSRDQ
Sbjct: 579 VDASGSMALNRMQNAKGAALKLLAESYTSRDQ 610

>ref|NP_563821.2| magnesium-chelatase, subunit chlD, chloroplast (Mg-protoporphyrin
           IX chelatase) (CHLD), putative [Arabidopsis thaliana]
           gi|17380694|gb|AAL36177.1| putative Mg-chelatase
           [Arabidopsis thaliana] gi|20259647|gb|AAM14341.1|
           putative Mg-chelatase [Arabidopsis thaliana]
          Length = 760

 Score =  204 bits (518), Expect = 5e-52
 Identities = 105/152 (69%), Positives = 131/152 (86%)
 Frame = +2

Query: 5   DQDEPEIPQEFMFESEGVIMDPSILMFAQQ*QRAQGRSGRAKTLIFSDDRGRYIKPMLPK 184
           +Q + +IP+EF+F++EG ++D  +L FAQQ Q+ +G++GRAK +IFS+DRGRYIKPMLPK
Sbjct: 447 EQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPK 506

Query: 185 GDKVKRLAVDATLRAAAPYQKIRRQQAISEGKVQRKVYVDKPDMRSKKLARKAGALVIFV 364
           G  VKRLAVDATLRAAAPYQK+RR++ IS     RKV+V+K DMR+K++ARKAGALVIFV
Sbjct: 507 GP-VKRLAVDATLRAAAPYQKLRREKDISG---TRKVFVEKTDMRAKRMARKAGALVIFV 562

Query: 365 VDASGSMALNRMSAAKGACMRLLAESYTSRDQ 460
           VDASGSMALNRM  AKGA ++LLAESYTSRDQ
Sbjct: 563 VDASGSMALNRMQNAKGAALKLLAESYTSRDQ 594

>gb|AAL24388.1| similar to magnesium-chelatase subunit ChlD precursor [Arabidopsis
           thaliana] gi|21389627|gb|AAM48012.1| magnesium-chelatase
           subunit ChlD-like protein [Arabidopsis thaliana]
          Length = 471

 Score =  204 bits (518), Expect = 5e-52
 Identities = 105/152 (69%), Positives = 131/152 (86%)
 Frame = +2

Query: 5   DQDEPEIPQEFMFESEGVIMDPSILMFAQQ*QRAQGRSGRAKTLIFSDDRGRYIKPMLPK 184
           +Q + +IP+EF+F++EG ++D  +L FAQQ Q+ +G++GRAK +IFS+DRGRYIKPMLPK
Sbjct: 158 EQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPK 217

Query: 185 GDKVKRLAVDATLRAAAPYQKIRRQQAISEGKVQRKVYVDKPDMRSKKLARKAGALVIFV 364
           G  VKRLAVDATLRAAAPYQK+RR++ IS     RKV+V+K DMR+K++ARKAGALVIFV
Sbjct: 218 GP-VKRLAVDATLRAAAPYQKLRREKDISG---TRKVFVEKTDMRAKRMARKAGALVIFV 273

Query: 365 VDASGSMALNRMSAAKGACMRLLAESYTSRDQ 460
           VDASGSMALNRM  AKGA ++LLAESYTSRDQ
Sbjct: 274 VDASGSMALNRMQNAKGAALKLLAESYTSRDQ 305



EST assemble image


clone accession position
1 HCL006b02_r AV639849 1 373
2 MX236h06_r BP091320 18 460




Chlamydomonas reinhardtii
Kazusa DNA Research Institute