Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC005174A_C01 KCC005174A_c01
(455 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays] 40 0.012
sp|Q9FEC4|RAA3_CHLRE Trans-splicing factor Raa3, chloroplast pre... 39 0.021
ref|ZP_00061713.1| hypothetical protein [Clostridium thermocellu... 39 0.035
ref|NP_189097.1| protein kinase family [Arabidopsis thaliana] 39 0.035
ref|NP_064483.1| multidomain presynaptic cytomatrix protein Picc... 38 0.046
>gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays]
Length = 274
Score = 40.0 bits (92), Expect = 0.012
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -1
Query: 443 RDPTGGSHSRCCRRCPAPGPGRQTAAHAASAVGMKCAWSSSESGEESGSSRQSAAR---- 276
R+PT CRRCP+P P R TA + S G + S S +A+R
Sbjct: 99 REPTPRGRPAPCRRCPSPAPARPTACSSRSTAGSPSGPTPCPSQRRSPGCTGTASRPTTA 158
Query: 275 ----CWVHAAASAPP 243
W ++A +PP
Sbjct: 159 SRTLTWPSSSARSPP 173
>sp|Q9FEC4|RAA3_CHLRE Trans-splicing factor Raa3, chloroplast precursor
gi|11692772|gb|AAG39999.1|AF310674_1 trans-splicing
factor Raa3 [Chlamydomonas reinhardtii]
gi|11692774|gb|AAG40000.1| trans-splicing factor Raa3
[Chlamydomonas reinhardtii]
Length = 1783
Score = 39.3 bits (90), Expect = 0.021
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Frame = -1
Query: 452 PPPRDPTGGSHSRCCRRCPAPGPGRQTAAHAASAVGMKCAWSSSES---------GEESG 300
PP R+P G R APG G Q + A CA + ES G +
Sbjct: 217 PPEREPQAGKPRASGRAPAAPGVGPQDVGGGSGA----CAPAPDESHMGLTHRDQGHDER 272
Query: 299 SSRQSAARCWVHAAASAPP--PRRMQPLL*LADAR------GTAKHSGCERAGLAGTQIR 144
S Q+A W A +APP P P L A R GT G R + G R
Sbjct: 273 IS-QTAGEAWKAGAVAAPPAAPTPSPPGLAAAPTRLASSALGTHSSDGDMRRAVPG---R 328
Query: 143 TTSSMTYCANAIELS*SLESGCFRN 69
T S++ A + LS S S RN
Sbjct: 329 DTPSLSAVAGPVTLSGSSSSSSGRN 353
>ref|ZP_00061713.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 710
Score = 38.5 bits (88), Expect = 0.035
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Frame = +2
Query: 224 RAAYDVEVEPMPPRAPNNAPRFGG-----------STPTPPPTPTKTTRTSFQPPT 358
R+ YD E+ P PP P AP GG ST TP PTPT T+ TS + PT
Sbjct: 459 RSVYDGEL-PYPPVTPTPAPTSGGGSGGSGGSGGGSTATPAPTPTPTS-TSIEEPT 512
>ref|NP_189097.1| protein kinase family [Arabidopsis thaliana]
Length = 509
Score = 38.5 bits (88), Expect = 0.035
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Frame = +2
Query: 251 PMPPRAPNNA--PRFGGSTPTPPP--------TPTKTTRTSFQPPTRRELLFGALGLGLG 400
P PPR+P+ + PR G P PP TPT T S PP+ L GA+ +G+
Sbjct: 72 PPPPRSPSTSTPPRLGNRNPPPPASPSGQEPTTPTMTPGFSLSPPSPSRLSTGAV-VGIS 130
Query: 401 IAG 409
I G
Sbjct: 131 IGG 133
>ref|NP_064483.1| multidomain presynaptic cytomatrix protein Piccolo; piccolo
(presynaptic cytomatrix protein) [Rattus norvegicus]
gi|24212076|sp|Q9JKS6|PCLO_RAT Piccolo protein
(Multidomain presynaptic cytomatrix protein)
gi|7528227|gb|AAF63196.1| multidomain presynaptic
cytomatrix protein Piccolo [Rattus norvegicus]
Length = 5085
Score = 38.1 bits (87), Expect = 0.046
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 209 RPITIRAAYDVEVEPMPPRAPNNAPRFGGSTPTPPPTPTKTTRTSFQPPT 358
RP ++ D+ +P PP P P ST +PPPTP TS +PPT
Sbjct: 2337 RPFFRSSSLDISAQPPPPPPP---PPPSPSTSSPPPTPPLPPATSPKPPT 2383
