KCC005148A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC005148A_C01 KCC005148A_c01
CTCGAGTTTTTTTTTTTTTTTTTTTGGGTGCAATTTCTTGGTTACATATTAAAGACAGAA
AGCCGAGTGCGCAGCTTTGGCAAGCACTCTTCGTACACGGTCCCACACATCCTTTCTTCA
CCCTGCGGTCTGTTCAGGTGTTCCAAACGGAAGTCAGCATGGTCAACACACGTCAAAAGG
AGTGTGCAGGAGCTCGTGCGGTGCCAAGTGGCCAACAAACAATAAATTCCAATCTCACGA
CAAAACCGCCCGAATAAGCTCTGGCATTCCGAGGGGAACAGATGCGTGGTACGGTTGTAT
AGAAGCTTGTAAGAAGAGTAGGAAGCCCCCGCAGCAGCAAGAGAACGTAGCCTCCCCCAA
AGAGAGCGACGCAATACTAAGCCTCGTCAGAGATATGGGTCGAAATAAGCCCAAGACCCC
GTGCAGCTAGAACGCAACCTTGCCGCGCGTCAGCGCGGCTAACGCATCCCTGTGCCTCCT
CCTCCTCACCCGTCTGTTGCAAGGATGCCGAGTCAGTCATACGCAGATGATCACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC005148A_C01 KCC005148A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN17644.1| corkscrew phosphatase splice variant B [Drosophil...    42  0.007
gb|AAN17620.1| corkscrew phosphatase splice variant B [Drosophil...    38  0.095
ref|NP_477131.1| corkscrew CG3954-PB [Drosophila melanogaster] g...    38  0.095
gb|AAB02544.1| corkscrew protein 4A                                    38  0.095
gb|AAN17636.1| corkscrew phosphatase splice variant B [Drosophil...    38  0.095

>gb|AAN17644.1| corkscrew phosphatase splice variant B [Drosophila simulans]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
 Frame = +2

Query: 203 AKWPTNNKFQSHDKTARISSGIPRGTDAWYGCIEACKKSRKPPQQQENVASPKESDAILS 382
           A+ P      +HD+ A+I  G+ +G DA        ++ R+P   Q + ++   ++++  
Sbjct: 98  AQEPACKNCMTHDELAQIIKGVTKGADAQSNRDNRLQRRRRPLSAQPSASASTSTESLHR 157

Query: 383 LVRDMGRNKPKTPCS*NATLPRVSAA-------NASLCLLLLTRL 496
           L      + P TP S  AT P+  AA       N++L LL   R+
Sbjct: 158 LTPSPQASYPATPTSWTATPPQFPAAFGGASCSNSTLSLLATMRV 202

>gb|AAN17620.1| corkscrew phosphatase splice variant B [Drosophila melanogaster]
           gi|23344973|gb|AAN17632.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
           gi|23344988|gb|AAN17642.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
          Length = 945

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
 Frame = +2

Query: 203 AKWPTNNKFQSHDKTARISSGIPRGTDAWYGCIEACKKSRKPPQQQENVA--SPKESDAI 376
           A+ P      +HD+ A+I  G+ +G DA        ++ R+P   Q + A  +   ++++
Sbjct: 98  AQEPACKNCMTHDELAQIIKGVAKGADAQRNRDNRLQRRRRPLSAQPSAAASASTSTESL 157

Query: 377 LSLVRDMGRNKPKTPCS*NATLPRVSAA-------NASLCLLLLTRL 496
             L      + P TP S  AT P+  AA       N++L LL   R+
Sbjct: 158 HRLTPSPQASYPATPTSWTATPPQFPAAFGGASCSNSTLSLLATMRV 204

>ref|NP_477131.1| corkscrew CG3954-PB [Drosophila melanogaster]
           gi|6706168|emb|CAB65871.1| EG:BACN25G24.2 [Drosophila
           melanogaster] gi|7290264|gb|AAF45725.1| CG3954-PB
           [Drosophila melanogaster] gi|23344940|gb|AAN17610.1|
           corkscrew phosphatase splice variant B [Drosophila
           melanogaster] gi|23344943|gb|AAN17612.1| corkscrew
           phosphatase splice variant B [Drosophila melanogaster]
           gi|23344946|gb|AAN17614.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
           gi|23344949|gb|AAN17616.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
           gi|23344952|gb|AAN17618.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
           gi|23344958|gb|AAN17622.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
           gi|23344961|gb|AAN17624.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
           gi|23344964|gb|AAN17626.1| corkscrew phosphatase splice
           variant B [Drosophila melanogaster]
          Length = 945

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
 Frame = +2

Query: 203 AKWPTNNKFQSHDKTARISSGIPRGTDAWYGCIEACKKSRKPPQQQENVA--SPKESDAI 376
           A+ P      +HD+ A+I  G+ +G DA        ++ R+P   Q + A  +   ++++
Sbjct: 98  AQEPACKNCMTHDELAQIIKGVAKGADAQRNRDNRLQRRRRPLSAQPSAAASASTSTESL 157

Query: 377 LSLVRDMGRNKPKTPCS*NATLPRVSAA-------NASLCLLLLTRL 496
             L      + P TP S  AT P+  AA       N++L LL   R+
Sbjct: 158 HRLTPSPQASYPATPTSWTATPPQFPAAFGGASCSNSTLSLLATMRV 204

>gb|AAB02544.1| corkscrew protein 4A
          Length = 945

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
 Frame = +2

Query: 203 AKWPTNNKFQSHDKTARISSGIPRGTDAWYGCIEACKKSRKPPQQQENVA--SPKESDAI 376
           A+ P      +HD+ A+I  G+ +G DA        ++ R+P   Q + A  +   ++++
Sbjct: 98  AQEPACKNCMTHDELAQIIKGVAKGADAQRNRDNRLQRRRRPLSAQPSAAASASTSTESL 157

Query: 377 LSLVRDMGRNKPKTPCS*NATLPRVSAA-------NASLCLLLLTRL 496
             L      + P TP S  AT P+  AA       N++L LL   R+
Sbjct: 158 HRLTPSPQASYPATPTSWTATPPQFPAAFGGASCSNSTLSLLATMRV 204

>gb|AAN17636.1| corkscrew phosphatase splice variant B [Drosophila melanogaster]
          Length = 945

 Score = 37.7 bits (86), Expect = 0.095
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
 Frame = +2

Query: 203 AKWPTNNKFQSHDKTARISSGIPRGTDAWYGCIEACKKSRKPPQQQENVA--SPKESDAI 376
           A+ P      +HD+ A+I  G+ +G DA        ++ R+P   Q + A  +   ++++
Sbjct: 98  AQEPACKNCMTHDELAQIIKGVAKGADAQRNRDNRLQRRRRPLSAQPSAAASASTSTESL 157

Query: 377 LSLVRDMGRNKPKTPCS*NATLPRVSAA-------NASLCLLLLTRL 496
             L      + P TP S  AT P+  AA       N++L LL   R+
Sbjct: 158 HRLTPSPQASYPATPTSWTATPPQFPAAFGGASCSNSTLSLLATMRV 204



EST assemble image


clone accession position
1 MX227f03_r BP090695 1 550
2 HC044b12_r AV635270 3 625




Chlamydomonas reinhardtii
Kazusa DNA Research Institute