Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC005112A_C01 KCC005112A_c01
(492 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199698.1| U6 snRNA-associated Sm-related protein-like [Ar... 142 2e-33
ref|NP_036454.1| U6 snRNA-associated Sm-like protein 5; U6 snRNA... 127 1e-28
ref|NP_506870.1| u6 snRNA-associated Sm-like protein (5Q51+lsm-4... 125 3e-28
ref|XP_316632.1| ENSANGP00000011511 [Anopheles gambiae] gi|21298... 124 6e-28
ref|XP_224630.1| similar to RIKEN cDNA 2310034K10 [Rattus norveg... 118 3e-26
>ref|NP_199698.1| U6 snRNA-associated Sm-related protein-like [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like
protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis
thaliana]
Length = 88
Score = 142 bits (359), Expect = 2e-33
Identities = 68/84 (80%), Positives = 76/84 (89%)
Frame = +3
Query: 84 AGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEGKK 263
A NPS LLPSELIDRCIGSK+WVIMKGDKE+VG L+GFDVYVNMVLEDVTE E T EG++
Sbjct: 2 ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRR 61
Query: 264 LTKLDQILLNGNNIAMLVPGAKPD 335
+TKLDQILLNGNNIA+LVPG P+
Sbjct: 62 VTKLDQILLNGNNIAILVPGGSPE 85
>ref|NP_036454.1| U6 snRNA-associated Sm-like protein 5; U6 snRNA-associated Sm-like
protein [Homo sapiens] gi|13384942|ref|NP_079796.1| LSM5
homolog, U6 small nuclear RNA associated [Mus musculus]
gi|10720081|sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated
Sm-like protein LSm5 gi|5262860|emb|CAB45868.1| Lsm5
protein [Homo sapiens]
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated
Sm-like protein LSm5 [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus
musculus] gi|12847199|dbj|BAB27475.1| unnamed protein
product [Mus musculus] gi|13543565|gb|AAH05938.1| U6
snRNA-associated Sm-like protein 5 [Homo sapiens]
Length = 91
Score = 127 bits (318), Expect = 1e-28
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +3
Query: 78 NYAGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEG 257
N NPS LLP EL+D+CIGS++ ++MK DKEIVGTL GFD +VNMVLEDVTE E TPEG
Sbjct: 4 NATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEG 63
Query: 258 KKLTKLDQILLNGNNIAMLVPGAK 329
+++TKLDQILLNGNNI MLVPG +
Sbjct: 64 RRITKLDQILLNGNNITMLVPGGE 87
>ref|NP_506870.1| u6 snRNA-associated Sm-like protein (5Q51+lsm-4) [Caenorhabditis
elegans] gi|7500090|pir||T21508 hypothetical protein
F28F8.3 - Caenorhabditis elegans
gi|3876465|emb|CAB03013.1| C. elegans LSM-5 protein
(corresponding sequence F28F8.3) [Caenorhabditis
elegans]
Length = 91
Score = 125 bits (314), Expect = 3e-28
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = +3
Query: 90 NPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEGKKLT 269
NP+ LLP ELID+CIGSK+WVIMK DKEIVGTL GFD YVNMVLEDV E E+T +GK++T
Sbjct: 8 NPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMT 67
Query: 270 KLDQILLNGNNIAMLVPGAK 329
KLD ILLNGN+I MLVPG +
Sbjct: 68 KLDTILLNGNHITMLVPGGE 87
>ref|XP_316632.1| ENSANGP00000011511 [Anopheles gambiae] gi|21298834|gb|EAA10979.1|
ENSANGP00000011511 [Anopheles gambiae str. PEST]
Length = 99
Score = 124 bits (311), Expect = 6e-28
Identities = 59/82 (71%), Positives = 71/82 (85%)
Frame = +3
Query: 90 NPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEGKKLT 269
N S LLP EL+D+CIGS++ +IMK DKEIVGTL GFD +VNM+LEDVTE E+TPEG+++T
Sbjct: 13 NQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTPEGRRIT 72
Query: 270 KLDQILLNGNNIAMLVPGAKPD 335
KLDQILLNGNNI MLVPG+ D
Sbjct: 73 KLDQILLNGNNITMLVPGSSGD 94
>ref|XP_224630.1| similar to RIKEN cDNA 2310034K10 [Rattus norvegicus]
Length = 90
Score = 118 bits (296), Expect = 3e-26
Identities = 57/86 (66%), Positives = 69/86 (79%)
Frame = +3
Query: 78 NYAGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEG 257
N N S LLP EL+ +CIGS++ ++MK DK+IVGT GFD +VNMVLEDVTE E TPEG
Sbjct: 4 NATTNRSQLLPLELVAKCIGSRIHIVMKSDKDIVGTPLGFDDFVNMVLEDVTEFEITPEG 63
Query: 258 KKLTKLDQILLNGNNIAMLVPGAKPD 335
+++TKLDQILLNGNNI MLVPG P+
Sbjct: 64 RRITKLDQILLNGNNITMLVPGEGPE 89
