KCC004753A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC004753A_C01 KCC004753A_c01
ttacgtcgcaataagtagacttatctccactgcgctgcgataatccagcgcttATCAGCA
AAACCGGCAGGTTCCGAGAGCGTTTCGCTGGTCGCTTTACCGAAACGCCTGACCGCGCTC
TGAATTAACGAGTCTACGCGCAAGCCAAGGGACCTCCAATAAGTCTGATGGAGGCAAGGA
CAGTGTCAGTGCTTGCGGGGCTCGCGCACCGAGTCGCGAGTGCAGCATGGAGGAGTGCCA
GCGGTCTGCGGACTTGCACCACTACGACGCCAACGTACGGGAGAACGTCCGTCTACGTCA
AGGAGGCTCTGGACCTTCTGGACTTCGACCCTCAGGTTGAGAAGGCCATCCTCAACCCCG
AACGCGAAGTAACGGTGAACCTGGTGGTGCCCATGGACAATGGCGAGGTCAACATGTTCC
CCGCCTACCGGGTGCAGCACAACAACGCGCTGGGGCCCTTCAAGGGCGGCATCATCTACC
ACCCCGGTGTCACCCTGGAGAACATGCGCAACCTGGCCTCGCTCAACACGTGGAAGTTCA
GCCTGCTCAATGTGCAGTTCGGCGGCGCCAAGGCGGCGTGGGGGTGGACCGCGCCGCTCA
CGAGCGCGAACGGGACTGACCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC004753A_C01 KCC004753A_c01
         (623 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP83856.1| glutamate dehydrogenase [Chlamydomonas reinhardtii]    274  9e-73
dbj|BAB62311.1| glutamate dhydrogenase [Ulva pertusa]                 105  7e-22
dbj|BAB62312.1| glutamate dehydrogenase [Ulva pertusa]                105  7e-22
emb|CAA09478.1| glutamate dehydrogenase [Asparagus officinalis]        94  1e-18
ref|NP_867538.1| glutamate dehydrogenase A [Pirellula sp.] gi|32...    94  2e-18

>gb|AAP83856.1| glutamate dehydrogenase [Chlamydomonas reinhardtii]
          Length = 448

 Score =  274 bits (700), Expect = 9e-73
 Identities = 135/139 (97%), Positives = 136/139 (97%)
 Frame = +3

Query: 168 MEARTVSVLAGLAHRVASAAWRSASGLRTCTTTTPTYGRTSVYVKEALDLLDFDPQVEKA 347
           MEARTVSVLAGLAHRVASAAWRSASGLRTCTTTTPTYGRTSVYVKEALDLLDFDPQVEKA
Sbjct: 1   MEARTVSVLAGLAHRVASAAWRSASGLRTCTTTTPTYGRTSVYVKEALDLLDFDPQVEKA 60

Query: 348 ILNPEREVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFKGGIIYHPGVTLENMRNLASLN 527
           ILNP+REVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFKGGIIYHPGVTLENMRNLASLN
Sbjct: 61  ILNPDREVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFKGGIIYHPGVTLENMRNLASLN 120

Query: 528 TWKFSLLNVQFGGAKAAWG 584
           TWKFSLLNVQFGGAK   G
Sbjct: 121 TWKFSLLNVQFGGAKGGVG 139

>dbj|BAB62311.1| glutamate dhydrogenase [Ulva pertusa]
          Length = 447

 Score =  105 bits (261), Expect = 7e-22
 Identities = 47/96 (48%), Positives = 72/96 (74%)
 Frame = +3

Query: 285 TSVYVKEALDLLDFDPQVEKAILNPEREVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFK 464
           T+ +++EAL +LD  P +EK ++ P+RE+TV L++  D+G+   F  YRVQH+NA GPFK
Sbjct: 41  TNTFIREALAVLDLPPAMEKIVITPQREMTVELIINRDDGKPESFMGYRVQHDNARGPFK 100

Query: 465 GGIIYHPGVTLENMRNLASLNTWKFSLLNVQFGGAK 572
           GG+ +H    L+++R+LASL ++K +LL+V FGGAK
Sbjct: 101 GGLRFHKDADLDDVRSLASLMSFKTALLDVPFGGAK 136

>dbj|BAB62312.1| glutamate dehydrogenase [Ulva pertusa]
          Length = 421

 Score =  105 bits (261), Expect = 7e-22
 Identities = 47/96 (48%), Positives = 72/96 (74%)
 Frame = +3

Query: 285 TSVYVKEALDLLDFDPQVEKAILNPEREVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFK 464
           T+ +++EAL +LD  P +EK ++ P+RE+TV L++  D+G+   F  YRVQH+NA GPFK
Sbjct: 41  TNTFIREALAVLDLPPAMEKIVITPQREMTVELIINRDDGKPESFMGYRVQHDNARGPFK 100

Query: 465 GGIIYHPGVTLENMRNLASLNTWKFSLLNVQFGGAK 572
           GG+ +H    L+++R+LASL ++K +LL+V FGGAK
Sbjct: 101 GGLRFHKDADLDDVRSLASLMSFKTALLDVPFGGAK 136

>emb|CAA09478.1| glutamate dehydrogenase [Asparagus officinalis]
          Length = 411

 Score = 94.4 bits (233), Expect = 1e-18
 Identities = 46/100 (46%), Positives = 63/100 (63%)
 Frame = +3

Query: 285 TSVYVKEALDLLDFDPQVEKAILNPEREVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFK 464
           TS   K+A  LL  DP++EK++L P RE+ V   +P D+G +  F  +RVQH+NA GP K
Sbjct: 7   TSRNFKQAAKLLGLDPKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMK 66

Query: 465 GGIIYHPGVTLENMRNLASLNTWKFSLLNVQFGGAKAAWG 584
           GGI YH  V  + +  LA L TWK ++ N+ +GGAK   G
Sbjct: 67  GGIRYHSEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIG 106

>ref|NP_867538.1| glutamate dehydrogenase A [Pirellula sp.]
           gi|32445083|emb|CAD75085.1| glutamate dehydrogenase A
           [Pirellula sp.]
          Length = 413

 Score = 94.0 bits (232), Expect = 2e-18
 Identities = 41/100 (41%), Positives = 68/100 (68%)
 Frame = +3

Query: 285 TSVYVKEALDLLDFDPQVEKAILNPEREVTVNLVVPMDNGEVNMFPAYRVQHNNALGPFK 464
           T ++  +A D L+ DP + +A+L P+REV V + + +D+G +  +  +RVQH+++ GP K
Sbjct: 7   TRIFFDQAADRLEIDPDLREALLMPQREVQVQVTIRLDDGRLANYIGFRVQHDHSRGPMK 66

Query: 465 GGIIYHPGVTLENMRNLASLNTWKFSLLNVQFGGAKAAWG 584
           GG+ +HP V L+  R LASL TWK +++++ +GGAK   G
Sbjct: 67  GGLRFHPEVDLDETRALASLMTWKTAVVDLPYGGAKGGIG 106



EST assemble image


clone accession position
1 MX240b08_r BP091510 1 515
2 CM082e06_r AV392116 47 624




Chlamydomonas reinhardtii
Kazusa DNA Research Institute