KCC004656A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC004656A_C01 KCC004656A_c01
CATCAAAGAGATTTACAGCGAAGAAGTCAATTGCGTCCGTGATTGATAATCAAAATGGGT
GCTGCGGCCAACATGTTGCAATTGGCCTCTACAGGGCACGCAGCAAAGGTGTGCACGTCA
ACGCTTGAATATGTACGCTTTGCTGTCTCCTCGTACCGTCAGGCTTCCGCACGCACAAAG
TCAGCGCCATGCGACCGTAGGGTTTACCTTAACGGCGGGAAAGCACCAATGTCAGCACGG
CTACGCCCACACTTTCCCTTCGCGCGCACGCGCGCTGCGGGGCCCGAACTTCAAAAACCG
TCCCGGTACTACACTGCCAAACTTCCGCACCACCCAGCAATCACAGCCACAGCGCACACT
CCCACACACAGACCTGCGCTTACGCCATACACTACTCGCGCCCTCAACCCGAACACAACA
CGCACATGATGTCCCGGCACACTCATCCTTTCCATAAGTTGTTGTGTTGCACATGGCAGC
TTGCTGCCGCCGCTGCTGCGTGGCGCAGCTTACACTTGTAGACGGGGCAGCACTGGAGTC
TTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC004656A_C01 KCC004656A_c01
         (543 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_061176.1| similar to contains similarity to phytocyanin/e...    39  0.034
ref|XP_291816.2| similar to otogelin; MLEMP [Homo sapiens]             38  0.099
dbj|BAC87330.1| unnamed protein product [Homo sapiens]                 38  0.099
ref|NP_033070.1| reticuloendotheliosis oncogene [Mus musculus] g...    37  0.13
emb|CAA33843.1| unnamed protein product [Mus musculus] gi|227081...    37  0.13

>ref|XP_061176.1| similar to contains similarity to phytocyanin/early nodulin-like
           protein~gene_id:K19P17.3 [Homo sapiens]
          Length = 567

 Score = 39.3 bits (90), Expect = 0.034
 Identities = 21/78 (26%), Positives = 35/78 (43%)
 Frame = +3

Query: 216 RESTNVSTATPTLSLRAHARCGARTSKTVPVLHCQTSAPPSNHSHSAHSHTQTCAYAIHY 395
           R+ T  +T  PT+    H+  G+  S   P +H +  +P    +HS H  +Q+  +    
Sbjct: 357 RKPTVQTTQKPTVHTETHSPHGSPQSTRKPTVHTEAHSPVHTEAHSPHGSSQSRPHRNPE 416

Query: 396 SRPQPEHNTHMMSRHTHP 449
           S  +P  +T   S H  P
Sbjct: 417 STRKPTVHTEAQSPHRSP 434

>ref|XP_291816.2| similar to otogelin; MLEMP [Homo sapiens]
          Length = 2883

 Score = 37.7 bits (86), Expect = 0.099
 Identities = 24/56 (42%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
 Frame = +1

Query: 268  TRAAGPELQKPSRYYTAKLPHHPAITATA-HTPTHRPALTPYT--TRALNPNTTRT 426
            T A G E   PS+         P ++  +  TPTHRPALTP    T ALNP  T T
Sbjct: 1406 TEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTAT 1461

>dbj|BAC87330.1| unnamed protein product [Homo sapiens]
          Length = 1508

 Score = 37.7 bits (86), Expect = 0.099
 Identities = 24/56 (42%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
 Frame = +1

Query: 268 TRAAGPELQKPSRYYTAKLPHHPAITATA-HTPTHRPALTPYT--TRALNPNTTRT 426
           T A G E   PS+         P ++  +  TPTHRPALTP    T ALNP  T T
Sbjct: 479 TEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTAT 534

>ref|NP_033070.1| reticuloendotheliosis oncogene [Mus musculus]
           gi|585812|sp|P15307|REL_MOUSE C-Rel proto-oncogene
           protein (C-Rel protein) gi|482603|pir||A60367
           transforming protein (c-rel) - mouse
           gi|297419|emb|CAA42817.1| c-rel [Mus musculus]
          Length = 587

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 20/42 (47%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
 Frame = +1

Query: 322 LPHHP-AITATAHTPTHRPALTPYTTRALNPNTTRT*CPGTL 444
           LPHHP AI + AH PT  P +T  T+  ++ NT  T   GTL
Sbjct: 368 LPHHPPAIPSVAHQPTSWPPVTHPTSHPVSTNTLSTFSAGTL 409

>emb|CAA33843.1| unnamed protein product [Mus musculus] gi|227081|prf||1613536A
           c-rel protein
          Length = 588

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 20/42 (47%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
 Frame = +1

Query: 322 LPHHP-AITATAHTPTHRPALTPYTTRALNPNTTRT*CPGTL 444
           LPHHP AI + AH PT  P +T  T+  ++ NT  T   GTL
Sbjct: 369 LPHHPPAIPSVAHQPTSWPPVTHPTSHPVSTNTLSTFSAGTL 410



EST assemble image


clone accession position
1 CM070h05_r AV391253 1 610
2 MX242c11_r BP091657 21 563




Chlamydomonas reinhardtii
Kazusa DNA Research Institute