KCC004408A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC004408A_C01 KCC004408A_c01
gcaccaggcgagtttcgcaccaggctgctggtcgctcgcgggcttctgagcggccaggaa
tgaaggaatgggctgattgtAGGCTGCCGGTTGGGCGTCGTTGGAATCACGGCGCAGCCG
GTGACCGGCAGCTTGGTTGGTCACATATACATAGGCATTCCGCATGGTGCATGTGTGCAT
TACCCTGCCGTCCGCTGCCTCTTCTTGTGCCAGAGGCACGAATACCACTTGCGAGAGGAC
TTTGCATTGCTCTCGCCTTCCACTTGAAACGGTGGACCTCATGCGCGCGCGTAACTTGCG
TACTTGACACAACACGGCGCTCACGCCGAACAGATTTTGTTGTTGCTACCGTTGGTGCAT
GTATGTTGTGTGTATGCGCGACGCCACACGACATGCAGGAAAGCTGCACCGCAGCGGATT
CTGGCTGATCTAGATAAGGTAAACGGTCTTCGCGTTCGCACGGGAAATCGTGGTGGACAA
CCTTGATCCCCGTTCCGGAGGGGTTATTCATACATTCGATTGGGTTTGGGTTGATGACAA
TCCGATTCGAAGGGACAAGCGACGTTATTGTTGTGCCGTCGGGCGCTGGCACCCACTGGC
GCTGGTTCAACGGCGTGTGGGCCAGAGGTCAAATTATGTCGGCGCGTGCACCACAGGAGC
GTAGCGTAAGGGCAAGTGAGACGTTGCGTCTGTGCGTGTGTGTGCATTCTGGTTGCGTGC
CGTGCCGTGCTGTGCCGGTGCCTTTAAGCATCAAGCACCCACGCCTGGGAGCGAGCGATT
ACGGncgacatgggtgcatggc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC004408A_C01 KCC004408A_c01
         (802 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC04446.1| unnamed protein product [Homo sapiens]                 37  0.37
dbj|BAC26154.1| unnamed protein product [Mus musculus]                 36  0.63
ref|NP_896227.1| conserved hypothetical protein [Synechococcus s...    35  1.1
ref|XP_147880.2| RIKEN cDNA 3110027P15 [Mus musculus]                  35  1.8
dbj|BAC29855.1| unnamed protein product [Mus musculus]                 34  2.4

>dbj|BAC04446.1| unnamed protein product [Homo sapiens]
          Length = 149

 Score = 37.0 bits (84), Expect = 0.37
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 628 VKLCRRVHHRSVA*GQVRRCVCACVCILVACRAVLCRC 741
           V  C++ H      G+V  CVCACVC+ V   A +C C
Sbjct: 49  VHACQQAHMHVSTQGRVCMCVCACVCMTVHICARVCEC 86

>dbj|BAC26154.1| unnamed protein product [Mus musculus]
          Length = 206

 Score = 36.2 bits (82), Expect = 0.63
 Identities = 15/36 (41%), Positives = 21/36 (57%)
 Frame = +1

Query: 628 VKLCRRVHHRSVA*GQVRRCVCACVCILVACRAVLC 735
           + +C RVH R+     V  CVC CVCI++ C   +C
Sbjct: 77  ILMCVRVHARACVCVCVCVCVCVCVCIVLFCLGTVC 112

>ref|NP_896227.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
           gi|33632191|emb|CAE06647.1| conserved hypothetical
           protein [Synechococcus sp. WH 8102]
          Length = 386

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +3

Query: 48  ERPGMKEWADCRLPVGRRWNHGAAGDRQLGWSHIHRHSA-WCMCALPCRPLP-LLVPEAR 221
           E      W+D RLP    W H AA     G + +H H   W   A P RP P  + P   
Sbjct: 280 EADAFARWSDARLPTEAEWEHAAAVH---GEALLHSHGVLWQWTASPYRPYPGFVAPPGA 336

Query: 222 IPLARGLCIALAFHLK 269
           I    G  ++  F L+
Sbjct: 337 IGEYNGKFMSSQFVLR 352

>ref|XP_147880.2| RIKEN cDNA 3110027P15 [Mus musculus]
          Length = 101

 Score = 34.7 bits (78), Expect = 1.8
 Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
 Frame = +1

Query: 679 RRCVCACVCILV-ACRAVLCRCL*ASSTHAWERAI 780
           R CVC CVC+ V  C    C CL   S   WER +
Sbjct: 30  RVCVCVCVCVCVCVCLLRECVCLLRESQRLWERIL 64

>dbj|BAC29855.1| unnamed protein product [Mus musculus]
          Length = 110

 Score = 34.3 bits (77), Expect = 2.4
 Identities = 14/21 (66%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
 Frame = +1

Query: 685 CVCACVCILVACRAV-LCRCL 744
           CVC CVC+LV CR V +C CL
Sbjct: 41  CVCVCVCLLVECRDVCVCVCL 61



EST assemble image


clone accession position
1 CM044c09_r AV389539 1 528
2 MX250f03_r BP092167 322 802




Chlamydomonas reinhardtii
Kazusa DNA Research Institute