KCC004338A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC004338A_C01 KCC004338A_c01
gcaccaggagacgagcaagatgctgctcaagggctccatgttcaaggaccactcgtgcgg
cggctacgtcaaggtctgctGCCTGGGGCGCCTGCCGCCGCCGCCGGCAGCGTAAGCGAC
ACAGAGAGGTCTTGAGCTGGAGCCGGTTTGACCATGAGATCTGTGTCGGCCTGGGCACGA
GCAGCGGGGTTTGGGAAGTTGAGGGGTTTATTTGGTGGCTGGTAATCGTACGGCTGCGAC
TGCCGTACAAAGGGTCACACACTGGGTGGAGTTGCGCCAGGCCTGTTTCTACGAGCTGCG
GTGGCTAGCTGACATGTGTGCACTCTCCTGATTCCATCTCCATACATCTATTCAAAGTCG
AACCGGACATCTGGTTGTGCGCGCTGACCACGATGCTGACTGTGTACGCAAATGTGTACG
TGCCCCTGTCCTTTGACTGCGTCATGGTGTTTACGCGGTTGGGCTTGGCTCCGGGTGCGT
CGCCTGGGATCCCTGCTCCTGTGACTTGATCAATGCGACACGTGTGTAGTATGTGTTTGC
TGTTCTGACGAGACAATAATACTTGAGCATGTGACGCCTGCGTGTAGCAGCGGCGCATTT
CGATACTCGTGATCTCATGACCACACTGCCGTCTGTCCTTTACCGCCTTTATGACATGAG
TGATGTGTTACGCGTGAGTTTCTGACATAACCGGGAGGAAACGCATGTGCTCTGTGCGCA
GGCAGGTCAAGGGCAATTCCTCGACATGGGAGCAACTGAAGCAGGAGGTCGGTTAGCCGT
GGCAGGTTTGCTGGATTGGATTTAACACAGTGTAGGGacattgcatgaggcattgcggat
tggaacgaactgcagacgccacataggctacgctagggaattgtaaccattttacat


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC004338A_C01 KCC004338A_c01
         (897 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00005894.1| COG0031: Cysteine synthase [Rhodobacter sphae...    40  0.041
gb|AAH58068.1| Unknown (protein for MGC:63802) [Danio rerio]           38  0.26
sp|P55200|HRX_MOUSE Zinc finger protein HRX (ALL-1) gi|688443|gb...    37  0.59
pir||A48205 All-1 protein +GTE form - mouse (fragment)                 37  0.59
ref|XP_331951.1| hypothetical protein [Neurospora crassa] gi|289...    37  0.59

>ref|ZP_00005894.1| COG0031: Cysteine synthase [Rhodobacter sphaeroides]
          Length = 598

 Score = 40.4 bits (93), Expect = 0.041
 Identities = 31/92 (33%), Positives = 42/92 (44%)
 Frame = -1

Query: 402 QSASWSARTTRCPVRL*IDVWRWNQESAHMSASHRSS*KQAWRNSTQCVTLCTAVAAVRL 223
           +S S ++++ R P R  +  WRW+   A MSA  R                  A++A R 
Sbjct: 16  RSGSKASKSFRGPTRT-MSSWRWSAARAAMSAPSR------------------AISARRS 56

Query: 222 PATK*TPQLPKPRCSCPGRHRSHGQTGSSSRP 127
            AT        P C+ PGR RS  +TGS SRP
Sbjct: 57  AATA-----MSPGCAAPGRGRSRPRTGSRSRP 83

>gb|AAH58068.1| Unknown (protein for MGC:63802) [Danio rerio]
          Length = 896

 Score = 37.7 bits (86), Expect = 0.26
 Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -2

Query: 332 IRRVHTCQLATAARRNRPGA--TPPSV*PFVRQSQPYDYQPPNKPLNFPNPAARAQADTD 159
           + + HT +    +R   PG   TPPS       + P    PP    N PNP A AQ   D
Sbjct: 671 VTKRHTSRSPKRSRGTSPGKRRTPPS------SASP----PPRHRRNSPNPPA-AQRGRD 719

Query: 158 LMVKPAPAQDLSVSLTLPAAAAGAPGSRP*RSRRTSGP 45
               P PA    VS + P    GA GS P R RR + P
Sbjct: 720 TRSSP-PAHTTRVS-SSPPGRYGASGSSPQRQRRQTSP 755

>sp|P55200|HRX_MOUSE Zinc finger protein HRX (ALL-1) gi|688443|gb|AAA62593.1| All-1
            protein
          Length = 3866

 Score = 36.6 bits (83), Expect = 0.59
 Identities = 20/78 (25%), Positives = 37/78 (46%)
 Frame = -3

Query: 649  KAVKDRRQCGHEITSIEMRRCYTQASHAQVLLSRQNSKHILHTCRIDQVTGAGIPGDAPG 470
            K ++  R+C  ++T ++M     Q+ + Q      +  HI   C  + V+ +  PG  PG
Sbjct: 2408 KELQAPRKCSVKVTPLKMEG-ENQSKNTQKESGPGSPAHIESVCPAEPVSASRSPGAGPG 2466

Query: 469  AKPNRVNTMTQSKDRGTY 416
             +P+  NT++Q      Y
Sbjct: 2467 VQPSPNNTLSQDPQSNNY 2484

>pir||A48205 All-1 protein +GTE form - mouse (fragment)
          Length = 3869

 Score = 36.6 bits (83), Expect = 0.59
 Identities = 20/78 (25%), Positives = 37/78 (46%)
 Frame = -3

Query: 649  KAVKDRRQCGHEITSIEMRRCYTQASHAQVLLSRQNSKHILHTCRIDQVTGAGIPGDAPG 470
            K ++  R+C  ++T ++M     Q+ + Q      +  HI   C  + V+ +  PG  PG
Sbjct: 2411 KELQAPRKCSVKVTPLKMEG-ENQSKNTQKESGPGSPAHIESVCPAEPVSASRSPGAGPG 2469

Query: 469  AKPNRVNTMTQSKDRGTY 416
             +P+  NT++Q      Y
Sbjct: 2470 VQPSPNNTLSQDPQSNNY 2487

>ref|XP_331951.1| hypothetical protein [Neurospora crassa] gi|28925586|gb|EAA34609.1|
            hypothetical protein [Neurospora crassa]
          Length = 1032

 Score = 36.6 bits (83), Expect = 0.59
 Identities = 26/96 (27%), Positives = 32/96 (33%)
 Frame = -2

Query: 704  AFPPGYVRNSRVTHHSCHKGGKGQTAVWS*DHEYRNAPLLHAGVTCSSIIVSSEQQTHTT 525
            + PP Y       HH    GG       S      N P  ++G +      SS    H  
Sbjct: 750  SLPPNYQTRP---HHDPDAGGNSDGVPLSTPSPNSNQPTPNSGTS------SSNHHHHLC 800

Query: 524  HVSH*SSHRSRDPRRRTRSQAQPRKHHDAVKGQGHV 417
            H  H   H+ + P      Q  P  HH    GQG V
Sbjct: 801  HQMH--QHQHQHPHHHPHPQPHPHAHHQQEHGQGQV 834



EST assemble image


clone accession position
1 CM035e07_r AV388707 1 369
2 MX259c11_r BP092798 190 511
3 MXL012e04_r BP093716 357 897




Chlamydomonas reinhardtii
Kazusa DNA Research Institute