KCC004234A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC004234A_C01 KCC004234A_c01
gcacgaggaaaatgcgtccgctcacagaagaggagacgaaagctgtgttcgagaagcttt
acaaattcataggcaagaacATAAAGAACCTCATCGACCGGCCAAACGACCCGCACTGTT
TCCGCCTGCACAAAAACAAGGTTTTCTATGTGAAGGAGAGGCTGATGAAGAAGGCCACAA
ACGTTGCACGAGACAAGCTGGTGGCGCTGGGAACGTGCATCGGCAAGCTGACGCACACGG
GGAAGTTCCGCCTGACCATTGGGGCGCTGGACCTCATTTCGCAATACGCGAAGTACAAGA
TCTGGGTGAAGCCTTCCGCGGAGATGCAGTTCCTGTACGGCAACAACGTGCTCAAAAGCG
GCCTGGCGCGCATCACCGAGAACACGCCCGCCTACACGGGTGTGGTCATCTACAACATGG
CTGACATCCCGCTGGGCTTCGGCGTGACCGCCAAGTCCACCAACGAGTGCCGGAATCTGG
ACCCCAACGCCGTCGTCACCTTCCACCAGGCCGACTGCGGCGAGTTTCTGCGTGCCGAGG
ACGAGCTATAAATAGCCCTTGGCCTCACGGGCGCCCTGCTCGACCGGTTGGTCGTGAATA
ATGACATCCTGACCTAACCAACCCGGCTATGAGTGTGCAGCCGGCCGTTTGACCAAGTAA
TGTGGTAGTTGGAGTGGACGTGAGCGCAGGAAGCGGGGCTTGGncttatt


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC004234A_C01 KCC004234A_c01
         (710 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_057185.1| Saccharomyces cerevisiae Nip7p homolog [Homo sa...   251  8e-66
ref|NP_620202.1| Saccharomyces cerevisiae Nip7p homolog [Rattus ...   249  3e-65
dbj|BAB29247.1| unnamed protein product [Mus musculus] gi|132782...   249  3e-65
ref|NP_079667.1| Saccharomyces cerevisiae Nip7p homolog [Mus mus...   248  7e-65
ref|NP_587718.1| putative protein involved in 60S ribosome subun...   246  3e-64

>ref|NP_057185.1| Saccharomyces cerevisiae Nip7p homolog [Homo sapiens]
           gi|4680713|gb|AAD27746.1|AF132971_1 CGI-37 protein [Homo
           sapiens] gi|5114055|gb|AAD40195.1| HSPC031 [Homo
           sapiens] gi|16198520|gb|AAH15941.1| Saccharomyces
           cerevisiae Nip7p homolog [Homo sapiens]
           gi|21104430|dbj|BAB93485.1| hypothetical
           protein(HSPC031) [Homo sapiens]
           gi|21104468|dbj|BAB93504.1| OK/SW-CL.78 [Homo sapiens]
          Length = 180

 Score =  251 bits (641), Expect = 8e-66
 Identities = 114/179 (63%), Positives = 146/179 (80%)
 Frame = +3

Query: 12  MRPLTEEETKAVFEKLYKFIGKNIKNLIDRPNDPHCFRLHKNKVFYVKERLMKKATNVAR 191
           MRPLTEEET+ +FEK+ K+IG+N++ L+DRP+  +CFRLH ++V+YV E++MK A N++ 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG 60

Query: 192 DKLVALGTCIGKLTHTGKFRLTIGALDLISQYAKYKIWVKPSAEMQFLYGNNVLKSGLAR 371
           DKLV+LGTC GK T T KFRL + ALD ++ YAKYK+W+KP AE  FLYGN+VLKSGL R
Sbjct: 61  DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR 120

Query: 372 ITENTPAYTGVVIYNMADIPLGFGVTAKSTNECRNLDPNAVVTFHQADCGEFLRAEDEL 548
           ITENT  Y GVV+Y+MADIPLGFGV AKST +CR +DP A+V FHQAD GE++R E+ L
Sbjct: 121 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

>ref|NP_620202.1| Saccharomyces cerevisiae Nip7p homolog [Rattus norvegicus]
           gi|5360166|gb|AAD42887.1|AF158186_1 pEachy [Rattus
           norvegicus] gi|37590769|gb|AAH59114.1| Saccharomyces
           cerevisiae Nip7p homolog [Rattus norvegicus]
          Length = 180

 Score =  249 bits (636), Expect = 3e-65
 Identities = 112/179 (62%), Positives = 145/179 (80%)
 Frame = +3

Query: 12  MRPLTEEETKAVFEKLYKFIGKNIKNLIDRPNDPHCFRLHKNKVFYVKERLMKKATNVAR 191
           MRPLTEEET+ +FEK+ K+IG+N++ L+DRP+  +CFRLH ++V+YV E ++K A N++ 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEMILKLAANISG 60

Query: 192 DKLVALGTCIGKLTHTGKFRLTIGALDLISQYAKYKIWVKPSAEMQFLYGNNVLKSGLAR 371
           DKLV+LGTC GK T T KFRL + ALD ++ YAKYK+W+KP AE  FLYGN+VLKSGL R
Sbjct: 61  DKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR 120

Query: 372 ITENTPAYTGVVIYNMADIPLGFGVTAKSTNECRNLDPNAVVTFHQADCGEFLRAEDEL 548
           ITENT  Y GVV+Y+MAD+PLGFGV AKST +CR +DP A+V FHQAD GE++R E+ L
Sbjct: 121 ITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYIRHEETL 179

>dbj|BAB29247.1| unnamed protein product [Mus musculus] gi|13278292|gb|AAH03972.1|
           Saccharomyces cerevisiae Nip7p homolog [Mus musculus]
          Length = 180

 Score =  249 bits (636), Expect = 3e-65
 Identities = 114/179 (63%), Positives = 145/179 (80%)
 Frame = +3

Query: 12  MRPLTEEETKAVFEKLYKFIGKNIKNLIDRPNDPHCFRLHKNKVFYVKERLMKKATNVAR 191
           MRPLTEEET+ +FEK+ K+IG+N++ L+DRP+  +CFRLH ++V+YV E ++K A N++ 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISG 60

Query: 192 DKLVALGTCIGKLTHTGKFRLTIGALDLISQYAKYKIWVKPSAEMQFLYGNNVLKSGLAR 371
           DKLV+LGTC GK T T KFRL + ALD ++ YAKYK+WVKP AE  FLYGN+VLKSGL R
Sbjct: 61  DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGR 120

Query: 372 ITENTPAYTGVVIYNMADIPLGFGVTAKSTNECRNLDPNAVVTFHQADCGEFLRAEDEL 548
           ITENT  Y GVV+Y+MADIPLGFGV AKST +CR +DP A+V FHQAD GE++R E+ L
Sbjct: 121 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

>ref|NP_079667.1| Saccharomyces cerevisiae Nip7p homolog [Mus musculus]
           gi|12834593|dbj|BAB22972.1| unnamed protein product [Mus
           musculus]
          Length = 180

 Score =  248 bits (633), Expect = 7e-65
 Identities = 114/179 (63%), Positives = 144/179 (79%)
 Frame = +3

Query: 12  MRPLTEEETKAVFEKLYKFIGKNIKNLIDRPNDPHCFRLHKNKVFYVKERLMKKATNVAR 191
           MRPLTEEET  +FEK+ K+IG+N++ L+DRP+  +CFRLH ++V+YV E ++K A N++ 
Sbjct: 1   MRPLTEEETPVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISG 60

Query: 192 DKLVALGTCIGKLTHTGKFRLTIGALDLISQYAKYKIWVKPSAEMQFLYGNNVLKSGLAR 371
           DKLV+LGTC GK T T KFRL + ALD ++ YAKYK+WVKP AE  FLYGN+VLKSGL R
Sbjct: 61  DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGR 120

Query: 372 ITENTPAYTGVVIYNMADIPLGFGVTAKSTNECRNLDPNAVVTFHQADCGEFLRAEDEL 548
           ITENT  Y GVV+Y+MADIPLGFGV AKST +CR +DP A+V FHQAD GE++R E+ L
Sbjct: 121 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

>ref|NP_587718.1| putative protein involved in 60S ribosome subunit biogenesis.
           [Schizosaccharomyces pombe] gi|7492919|pir||T41300
           protein involved in 60S ribosome subunit biogene sis -
           fission yeast (Schizosaccharomyces pombe)
           gi|2995373|emb|CAA18313.1| SPCC320.11c
           [Schizosaccharomyces pombe] gi|3646459|emb|CAA20923.1|
           SPCC330.18 [Schizosaccharomyces pombe]
          Length = 180

 Score =  246 bits (628), Expect = 3e-64
 Identities = 119/179 (66%), Positives = 143/179 (79%)
 Frame = +3

Query: 12  MRPLTEEETKAVFEKLYKFIGKNIKNLIDRPNDPHCFRLHKNKVFYVKERLMKKATNVAR 191
           MRPLT EETK  FEKL ++IGKNI +LIDRP+DPHCFRL K++V+YV ER MK AT+VAR
Sbjct: 1   MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVAR 60

Query: 192 DKLVALGTCIGKLTHTGKFRLTIGALDLISQYAKYKIWVKPSAEMQFLYGNNVLKSGLAR 371
             L++LG C GK T T KFRL I ALD I+QYA+YKIWVK + EM FLYGN+VLK+ + R
Sbjct: 61  QNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGR 120

Query: 372 ITENTPAYTGVVIYNMADIPLGFGVTAKSTNECRNLDPNAVVTFHQADCGEFLRAEDEL 548
           IT++TP + GVVIY+M D PLGFGVTA+ST E R L+P A+V FHQAD GE+LR ED L
Sbjct: 121 ITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179



EST assemble image


clone accession position
1 CM025a01_r AV388134 1 577
2 MX246e08_r BP091929 188 710




Chlamydomonas reinhardtii
Kazusa DNA Research Institute