KCC004133A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC004133A_C01 KCC004133A_c01
GCAGAGCGCAATATTACATCAACTAATTAAGTTAGTTGTCAGTGTTGGCGACACAACACC
TTTGAGAATGCAGCTTCAGCAGCGTCTGCCCTCCGGCGGTGCCGCCCGCAGCGCGCTGCG
CTTCGCGCCGCACCGTGTCCGTCCAGGCCACTGTCGCTCCCCCCGCTCCTACCTCGGGCA
AGAAGCTGTTCCAGTATGATGGCGCTCTTTCTGAGGTCGACCCGGAGATTAGTGCTCTCA
TCACCAAGGAGAAGTCTCGCCAGGTCCGTGGCCTGGAGCTGATTGCCTCGGAGAACTTCA
CCTCCAAGGCGGTGATGCAAGCCCTGGGCTCGTGCATGACCAACAAGTACTCCGAGGGTC
GCCCCAACGCGCGCTACTACGGCGGCAACGAGTACATTGACCAGGTCGAGCTGCTGTGCG
AGAAGCGCGCCCTGGAGCTGTTTGGCCTGGACCCGGCGGAGTGGGGCGTCAACGTGCAGC
CGCTGTCGGGCTCGCCCGCCAACTTCGCGGTGTACACGGCGCTGCTGCAGCCGCACGACC
GCATCATGGGCCTGGACCTGnCGCACGGTGGCCACTGACGCCGGGTTCTGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC004133A_C01 KCC004133A_c01
         (592 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567895.1| glycine hydroxymethyltransferase (EC 2.1.2.1) -...   207  1e-52
gb|AAK53034.1|AF375450_1 AT4g32520/F8B4_220 [Arabidopsis thalian...   207  1e-52
pir||T05362 glycine hydroxymethyltransferase (EC 2.1.2.1) F8B4.2...   205  4e-52
gb|AAP44712.1| putative glycine hydroxymethyltransferase [Oryza ...   197  1e-49
ref|NP_195506.1| glycine hydroxymethyltransferase like protein [...   195  3e-49

>ref|NP_567895.1| glycine hydroxymethyltransferase (EC 2.1.2.1) - like protein
           [Arabidopsis thaliana]
          Length = 529

 Score =  207 bits (526), Expect = 1e-52
 Identities = 105/184 (57%), Positives = 124/184 (67%), Gaps = 19/184 (10%)
 Frame = +3

Query: 81  SVCPPAVPPAARCASRRTVSVQ-------------------ATVAPPAPTSGKKLFQYDG 203
           SV PP +PP  + + +   ++                    +   P    S K++   D 
Sbjct: 22  SVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMRASSVSLPNVEISSKEIPFEDY 81

Query: 204 ALSEVDPEISALITKEKSRQVRGLELIASENFTSKAVMQALGSCMTNKYSEGRPNARYYG 383
            L EVDPE+  +ITKEK RQ R LELIASENFTS+AVM+A+GSC+TNKYSEG P  RYYG
Sbjct: 82  GLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141

Query: 384 GNEYIDQVELLCEKRALELFGLDPAEWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLX 563
           GNEYIDQ+E LC+ RAL  F LD  +WGVNVQPLSGSPANFAVYTA+L PHDRIMGLDL 
Sbjct: 142 GNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLP 201

Query: 564 HGGH 575
           HGGH
Sbjct: 202 HGGH 205

>gb|AAK53034.1|AF375450_1 AT4g32520/F8B4_220 [Arabidopsis thaliana]
           gi|23308475|gb|AAN18207.1| At4g32520/F8B4_220
           [Arabidopsis thaliana]
          Length = 529

 Score =  207 bits (526), Expect = 1e-52
 Identities = 105/184 (57%), Positives = 124/184 (67%), Gaps = 19/184 (10%)
 Frame = +3

Query: 81  SVCPPAVPPAARCASRRTVSVQ-------------------ATVAPPAPTSGKKLFQYDG 203
           SV PP +PP  + + +   ++                    +   P    S K++   D 
Sbjct: 22  SVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMRASSVSLPNVEISSKEIPFEDY 81

Query: 204 ALSEVDPEISALITKEKSRQVRGLELIASENFTSKAVMQALGSCMTNKYSEGRPNARYYG 383
            L EVDPE+  +ITKEK RQ R LELIASENFTS+AVM+A+GSC+TNKYSEG P  RYYG
Sbjct: 82  GLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141

Query: 384 GNEYIDQVELLCEKRALELFGLDPAEWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLX 563
           GNEYIDQ+E LC+ RAL  F LD  +WGVNVQPLSGSPANFAVYTA+L PHDRIMGLDL 
Sbjct: 142 GNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLP 201

Query: 564 HGGH 575
           HGGH
Sbjct: 202 HGGH 205

>pir||T05362 glycine hydroxymethyltransferase (EC 2.1.2.1) F8B4.220 -
           Arabidopsis thaliana gi|4049354|emb|CAA22579.1| glycine
           hydroxymethyltransferase (EC 2.1.2.1)-like protein
           [Arabidopsis thaliana] gi|7270156|emb|CAB79969.1|
           glycine hydroxymethyltransferase (EC 2.1.2.1)-like
           protein [Arabidopsis thaliana]
          Length = 462

 Score =  205 bits (521), Expect = 4e-52
 Identities = 98/133 (73%), Positives = 110/133 (82%)
 Frame = +3

Query: 177 GKKLFQYDGALSEVDPEISALITKEKSRQVRGLELIASENFTSKAVMQALGSCMTNKYSE 356
           GK++   D  L EVDPE+  +ITKEK RQ R LELIASENFTS+AVM+A+GSC+TNKYSE
Sbjct: 6   GKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSE 65

Query: 357 GRPNARYYGGNEYIDQVELLCEKRALELFGLDPAEWGVNVQPLSGSPANFAVYTALLQPH 536
           G P  RYYGGNEYIDQ+E LC+ RAL  F LD  +WGVNVQPLSGSPANFAVYTA+L PH
Sbjct: 66  GLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPH 125

Query: 537 DRIMGLDLXHGGH 575
           DRIMGLDL HGGH
Sbjct: 126 DRIMGLDLPHGGH 138

>gb|AAP44712.1| putative glycine hydroxymethyltransferase [Oryza sativa (japonica
           cultivar-group)]
          Length = 557

 Score =  197 bits (500), Expect = 1e-49
 Identities = 96/128 (75%), Positives = 107/128 (83%)
 Frame = +3

Query: 192 QYDGALSEVDPEISALITKEKSRQVRGLELIASENFTSKAVMQALGSCMTNKYSEGRPNA 371
           Q +  L EVDPEI+ +I  EK+RQ +GLELI SENFTS +VMQA+GS MTNKYSEG P A
Sbjct: 90  QLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGA 149

Query: 372 RYYGGNEYIDQVELLCEKRALELFGLDPAEWGVNVQPLSGSPANFAVYTALLQPHDRIMG 551
           RYYGGNEYID  E LC+KRALE F LDPA+WGVNVQPLSGSPANF VYTALL+PH+RIM 
Sbjct: 150 RYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMA 209

Query: 552 LDLXHGGH 575
           LDL HGGH
Sbjct: 210 LDLPHGGH 217

>ref|NP_195506.1| glycine hydroxymethyltransferase like protein [Arabidopsis
           thaliana] gi|7433551|pir||T05620 glycine
           hydroxymethyltransferase (EC 2.1.2.1) F20D10.50 -
           Arabidopsis thaliana gi|4467099|emb|CAB37533.1| glycine
           hydroxymethyltransferase like protein [Arabidopsis
           thaliana] gi|6899945|emb|CAB71289.1| serine
           hydroxymethyl transferase [Arabidopsis thaliana]
           gi|7270776|emb|CAB80458.1| glycine
           hydroxymethyltransferase like protein [Arabidopsis
           thaliana] gi|16226393|gb|AAL16156.1|AF428388_1
           AT4g37930/F20D10_50 [Arabidopsis thaliana]
           gi|16323083|gb|AAL15276.1| AT4g37930/F20D10_50
           [Arabidopsis thaliana] gi|17979462|gb|AAL50068.1|
           AT4g37930/F20D10_50 [Arabidopsis thaliana]
           gi|30102486|gb|AAP21161.1| At4g37930/F20D10_50
           [Arabidopsis thaliana]
          Length = 517

 Score =  195 bits (496), Expect = 3e-49
 Identities = 95/128 (74%), Positives = 106/128 (82%)
 Frame = +3

Query: 192 QYDGALSEVDPEISALITKEKSRQVRGLELIASENFTSKAVMQALGSCMTNKYSEGRPNA 371
           Q +  L EVDPEI+ +I  EK+RQ +GLELI SENFTS +VMQA+GS MTNKYSEG P A
Sbjct: 50  QLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGA 109

Query: 372 RYYGGNEYIDQVELLCEKRALELFGLDPAEWGVNVQPLSGSPANFAVYTALLQPHDRIMG 551
           RYYGGNEYID  E LC+KRALE F LDP +WGVNVQPLSGSPANF VYTALL+PH+RIM 
Sbjct: 110 RYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMA 169

Query: 552 LDLXHGGH 575
           LDL HGGH
Sbjct: 170 LDLPHGGH 177



EST assemble image


clone accession position
1 MX223e11_r BP090409 1 548
2 MX255c10_r BP092520 98 542
3 CM016a10_r AV387487 100 712




Chlamydomonas reinhardtii
Kazusa DNA Research Institute