KCC003637A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003637A_C01 KCC003637A_c01
CTGAATCCTTTATTGCAGCTACCGGTCATACGTTATACAGCGTACAGAAGTACGATGACC
TACTGAGCGTTCTCATGCCGAGTGTGCCGAGCGTGCCGACATGTCATGTGCTGGACTGAC
CAAGTCTCTAGACACCAAACGTGCTGCCAGCATATCTAATATGAAATCTAATAGTATCAG
AATGCATGTTCTCAAGTTTGAACGCAAGCAGGTGACCTTCAGTTGGGAGCGACTCGCCTC
TCACACCTCCCAAACCCCGCCGAAACGACCCCCAGAAGCACTACCTTCCAAAAATGACCA
CCTCCGATTCAGTTGAAACTCAGCAGGTGGCACCTACATAGCATAAGTATCCTTATTATA
TATGGTTTCCAGCCAGTAAAAACTATCCGAACGGACTATCCTTGAGACATGTCAACGGGT
TGCTCAGTGTCACGTGTCAACTACTTCTTCAACATCTCAAGGATGCTTTGCAGCTTTGCG
CCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003637A_C01 KCC003637A_c01
         (484 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_602832.1| Fusobacterium outer membrane protein family [Fu...    33  1.4
dbj|BAC43193.1| unknown protein [Arabidopsis thaliana]                 33  1.8
ref|NP_179364.2| expressed protein [Arabidopsis thaliana] gi|275...    33  1.8
pir||T08862 hypothetical protein A_TM017A05.9 - Arabidopsis thal...    33  1.8
pir||G84555 hypothetical protein At2g17730 [imported] - Arabidop...    33  1.8

>ref|NP_602832.1| Fusobacterium outer membrane protein family [Fusobacterium nucleatum
            subsp. nucleatum ATCC 25586] gi|19713314|gb|AAL94131.1|
            Fusobacterium outer membrane protein family
            [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 1630

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 22/69 (31%), Positives = 34/69 (48%)
 Frame = -1

Query: 253  LGGVRGESLPTEGHLLAFKLENMHSDTIRFHIRYAGSTFGV*RLGQSST*HVGTLGTLGM 74
            +G   G+     G  LA   + ++SDT +  I+    +FG    GQ +T   G +GT G+
Sbjct: 800  VGATLGKGQEGVGVYLAGNNQTLNSDTDKLSIKKG--SFGYVMTGQGNTVRTGKVGTTGI 857

Query: 73   RTLSRSSYF 47
             +LS  S F
Sbjct: 858  VSLSNDSVF 866

>dbj|BAC43193.1| unknown protein [Arabidopsis thaliana]
          Length = 241

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 25/84 (29%), Positives = 42/84 (49%)
 Frame = -2

Query: 294 FLEGSASGGRFGGVWEV*EASRSQLKVTCLRSNLRTCILILLDFILDMLAARLVSRDLVS 115
           F+ G+A G   G V+ + E   S L +     +   C L L+D I+ +L+ RLV R+ + 
Sbjct: 78  FIRGAAIGAISGAVFSI-EVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLV-RERIG 135

Query: 114 PAHDMSARSAHSA*ERSVGHRTSV 43
           PA   + +S   A + +    TS+
Sbjct: 136 PAMLSAVQSQMGAVDTAFDDHTSL 159

>ref|NP_179364.2| expressed protein [Arabidopsis thaliana]
           gi|27524904|emb|CAC81898.1| NEP1-interacting protein 2
           [Arabidopsis thaliana]
          Length = 241

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 25/84 (29%), Positives = 42/84 (49%)
 Frame = -2

Query: 294 FLEGSASGGRFGGVWEV*EASRSQLKVTCLRSNLRTCILILLDFILDMLAARLVSRDLVS 115
           F+ G+A G   G V+ + E   S L +     +   C L L+D I+ +L+ RLV R+ + 
Sbjct: 78  FIRGAAIGAISGAVFSI-EVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLV-RERIG 135

Query: 114 PAHDMSARSAHSA*ERSVGHRTSV 43
           PA   + +S   A + +    TS+
Sbjct: 136 PAMLSAVQSQMGAVDTAFDDHTSL 159

>pir||T08862 hypothetical protein A_TM017A05.9 - Arabidopsis thaliana
          Length = 292

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 25/84 (29%), Positives = 42/84 (49%)
 Frame = -2

Query: 294 FLEGSASGGRFGGVWEV*EASRSQLKVTCLRSNLRTCILILLDFILDMLAARLVSRDLVS 115
           F+ G+A G   G V+ + E   S L +     +   C L L+D I+ +L+ RLV R+ + 
Sbjct: 91  FIRGAAIGAISGAVFSI-EVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLV-RERIG 148

Query: 114 PAHDMSARSAHSA*ERSVGHRTSV 43
           PA   + +S   A + +    TS+
Sbjct: 149 PAMLSAVQSQMGAVDTAFDDHTSL 172

>pir||G84555 hypothetical protein At2g17730 [imported] - Arabidopsis thaliana
          Length = 279

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 25/84 (29%), Positives = 42/84 (49%)
 Frame = -2

Query: 294 FLEGSASGGRFGGVWEV*EASRSQLKVTCLRSNLRTCILILLDFILDMLAARLVSRDLVS 115
           F+ G+A G   G V+ + E   S L +     +   C L L+D I+ +L+ RLV R+ + 
Sbjct: 78  FIRGAAIGAISGAVFSI-EVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLV-RERIG 135

Query: 114 PAHDMSARSAHSA*ERSVGHRTSV 43
           PA   + +S   A + +    TS+
Sbjct: 136 PAMLSAVQSQMGAVDTAFDDHTSL 159



EST assemble image


clone accession position
1 CL22c01_r AV394236 1 602
2 MX243h05_r BP091758 143 549




Chlamydomonas reinhardtii
Kazusa DNA Research Institute