>KCC003513A_C01 KCC003513A_c01
caaGAAGATAACGTGCGCAAGTGCGTTTTTCAACAATCTGAGACGAGACGCTTCGCCTTC
ACAGCGGCCCTCTGAGTGTGCTTTAGCAAAGAAAATGGCTGGGGGCAGGTACATCTCGTT
CTTATGGGCAGTGCTGTCGCTGATAACAGTACTTGCAGTGGCTGAAGCGGACCTAGCATC
ATGGCTACACCGCCCGCCCCCTGCGTCAGCGCGGCGCCCTCCGCCATCCCGCCACCGGAA
GCCGCCGCCATCGGCGGTTCGGGTTGACCCGTTTGTGCAGCTCAACGTCACAGTGACAGG
CGAACTGTCGCTGGAGGCCGTGGACCCCGACCTGACCGCGGGCCAGGCCACAGACCCGCT
GGACAGCGTGGCGCCCGGCGAGGTGGTGCGGCGCCTGGTGGAGCGGGTGAACGAGAGCAC
CAGCGTCAACACACAGGTCGACTTCGACCCGGAGGCGGTGAAAGGGCTGGTGACGGGCG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003513A_C01 KCC003513A_c01
         (479 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH51192.1| Splicing factor proline/glutamine rich (polypyrim...    52  4e-06
ref|NP_005057.1| splicing factor proline/glutamine rich (polypyr...    50  1e-05
gb|AAH27708.1| SFPQ protein [Homo sapiens]                             50  1e-05
gb|AAH04534.1|AAH04534 Similar to splicing factor proline/glutam...    50  1e-05
ref|NP_076092.1| splicing factor proline/glutamine rich (polypyr...    49  3e-05

>gb|AAH51192.1| Splicing factor proline/glutamine rich (polypyrimidine tract
           binding protein associated) [Homo sapiens]
          Length = 707

 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 40/105 (38%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = +1

Query: 166 SGPSIMATPPAPCVSAAPSAIPPPEAAAIGGSG*PVCAAQRHSDRRTVAG--GRGPRPDR 339
           SGP    TPP P V++AP   PPP   +   SG P    Q        A   G GP P +
Sbjct: 145 SGPGPTPTPP-PAVTSAPPGAPPPTPPS---SGVPTTPPQAGGPPPPPAAVPGPGPGPKQ 200

Query: 340 GPGHRPAGQRGARR-GGAAPGGAGEREHQRQHTGRLRPGGGERAG 471
           GPG  P G +G +  GG  PGG         H    R GGGE  G
Sbjct: 201 GPG--PGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPRRGGGEPRG 243

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 18/55 (32%), Positives = 22/55 (39%)
 Frame = -1

Query: 476 PSPALSPPPGRSRPVC*RWCSRSPAPPGAAPPRRAPRCPAGLWPGPRSGRGPRPP 312
           P PA++  P  + P           PP A  P   P    G  PGP+ G GP  P
Sbjct: 153 PPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGP 207

 Score = 30.8 bits (68), Expect = 8.6
 Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
 Frame = -1

Query: 458 PPPGRSRPVC*RWCSRSPAPP-GAAPPRRAPRCPA-----GLWPGPRSGRGPRPPATVRL 297
           PP   S+PV  +     PAP  G+ PP  +   PA     G  PG   G  P PP  V  
Sbjct: 102 PPQDSSKPVVAQ--GPGPAPGVGSTPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159

Query: 296 S-------------L*R*AAQTGQPEPPMAAASGGGMAEGAALTQGAGG 189
           +             +     Q G P PP AA  G G   G     G GG
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG--PGPKQGPGPGG 206

>ref|NP_005057.1| splicing factor proline/glutamine rich (polypyrimidine tract
           binding protein associated); splicing factor
           proline/glutamine rich (polypyrimidine tract-binding
           protein-associated); PTB-associated splicing factor
           [Homo sapiens] gi|1709851|sp|P23246|SFPQ_HUMAN Splicing
           factor, proline-and glutamine-rich (Polypyrimidine
           tract-binding protein-associated splicing factor)
           (PTB-associated splicing factor) (PSF) (DNA-binding
           P52/P100 complex, 100 kDa subunit) gi|423054|pir||A46302
           PTB-associated splicing factor, long form - human
           gi|38458|emb|CAA50283.1| PTB-associated splicing factor
           [Homo sapiens]
          Length = 707

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 39/105 (37%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +1

Query: 166 SGPSIMATPPAPCVSAAPSAIPPPEAAAIGGSG*PVCAAQRHSDRRTVAG--GRGPRPDR 339
           SGP    TPP P V++AP   PPP   +   SG P    Q        A   G GP P +
Sbjct: 145 SGPGPTPTPP-PAVTSAPPGAPPPTPPS---SGVPTTPPQAGGPPPPPAAVPGPGPGPKQ 200

Query: 340 GPGHRPAGQRGARR-GGAAPGGAGEREHQRQHTGRLRPGGGERAG 471
           GPG  P G +G +  GG  PGG         H      GGGE  G
Sbjct: 201 GPG--PGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRG 243

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
 Frame = -1

Query: 458 PPPGRSRPVC*RWCSRSPAPP-GAAPPRRAPRCPA-----GLWPGPRSGRGPRPPATVRL 297
           PP   S+PV  +     PAP  G+APP  +   PA     G  PG   G  P PP  V  
Sbjct: 102 PPQDSSKPVVAQ--GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159

Query: 296 S-------------L*R*AAQTGQPEPPMAAASGGGMAEGAALTQGAGG 189
           +             +     Q G P PP AA  G G   G     G GG
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG--PGPKQGPGPGG 206

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 18/55 (32%), Positives = 22/55 (39%)
 Frame = -1

Query: 476 PSPALSPPPGRSRPVC*RWCSRSPAPPGAAPPRRAPRCPAGLWPGPRSGRGPRPP 312
           P PA++  P  + P           PP A  P   P    G  PGP+ G GP  P
Sbjct: 153 PPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGP 207

>gb|AAH27708.1| SFPQ protein [Homo sapiens]
          Length = 525

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 39/105 (37%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +1

Query: 166 SGPSIMATPPAPCVSAAPSAIPPPEAAAIGGSG*PVCAAQRHSDRRTVAG--GRGPRPDR 339
           SGP    TPP P V++AP   PPP   +   SG P    Q        A   G GP P +
Sbjct: 145 SGPGPTPTPP-PAVTSAPPGAPPPTPPS---SGVPTTPPQAGGPPPPPAAVPGPGPGPKQ 200

Query: 340 GPGHRPAGQRGARR-GGAAPGGAGEREHQRQHTGRLRPGGGERAG 471
           GPG  P G +G +  GG  PGG         H      GGGE  G
Sbjct: 201 GPG--PGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRG 243

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
 Frame = -1

Query: 458 PPPGRSRPVC*RWCSRSPAPP-GAAPPRRAPRCPA-----GLWPGPRSGRGPRPPATVRL 297
           PP   S+PV  +     PAP  G+APP  +   PA     G  PG   G  P PP  V  
Sbjct: 102 PPQDSSKPVVAQ--GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159

Query: 296 S-------------L*R*AAQTGQPEPPMAAASGGGMAEGAALTQGAGG 189
           +             +     Q G P PP AA  G G   G     G GG
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG--PGPKQGPGPGG 206

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 18/55 (32%), Positives = 22/55 (39%)
 Frame = -1

Query: 476 PSPALSPPPGRSRPVC*RWCSRSPAPPGAAPPRRAPRCPAGLWPGPRSGRGPRPP 312
           P PA++  P  + P           PP A  P   P    G  PGP+ G GP  P
Sbjct: 153 PPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGP 207

>gb|AAH04534.1|AAH04534 Similar to splicing factor proline/glutamine rich (polypyrimidine
           tract-binding protein-associated) [Homo sapiens]
          Length = 637

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 39/105 (37%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +1

Query: 166 SGPSIMATPPAPCVSAAPSAIPPPEAAAIGGSG*PVCAAQRHSDRRTVAG--GRGPRPDR 339
           SGP    TPP P V++AP   PPP   +   SG P    Q        A   G GP P +
Sbjct: 75  SGPGPTPTPP-PAVTSAPPGAPPPTPPS---SGVPTTPPQAGGPPPPPAAVPGPGPGPKQ 130

Query: 340 GPGHRPAGQRGARR-GGAAPGGAGEREHQRQHTGRLRPGGGERAG 471
           GPG  P G +G +  GG  PGG         H      GGGE  G
Sbjct: 131 GPG--PGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRG 173

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
 Frame = -1

Query: 458 PPPGRSRPVC*RWCSRSPAPP-GAAPPRRAPRCPA-----GLWPGPRSGRGPRPPATVRL 297
           PP   S+PV  +     PAP  G+APP  +   PA     G  PG   G  P PP  V  
Sbjct: 32  PPQDSSKPVVAQ--GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 89

Query: 296 S-------------L*R*AAQTGQPEPPMAAASGGGMAEGAALTQGAGG 189
           +             +     Q G P PP AA  G G   G     G GG
Sbjct: 90  APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG--PGPKQGPGPGG 136

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 18/55 (32%), Positives = 22/55 (39%)
 Frame = -1

Query: 476 PSPALSPPPGRSRPVC*RWCSRSPAPPGAAPPRRAPRCPAGLWPGPRSGRGPRPP 312
           P PA++  P  + P           PP A  P   P    G  PGP+ G GP  P
Sbjct: 83  PPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGP 137

>ref|NP_076092.1| splicing factor proline/glutamine rich (polypyrimidine tract
           binding protein associated) [Mus musculus]
           gi|17136071|gb|AAK60397.1| PTB-associated splicing
           factor [Mus musculus]
          Length = 699

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 40/112 (35%), Positives = 44/112 (38%), Gaps = 1/112 (0%)
 Frame = +1

Query: 139 ADNSTCSG*SGPSIMATPPAPCVSAAPSAIPPPEAAAIGGSG*PVCAAQRHSDRRTVAGG 318
           A+  T     GP    TPP    S AP   PPP   + G S  P    Q        AGG
Sbjct: 130 ANPPTTGAPPGPGPTPTPPPAVPSTAPGP-PPPSTPSSGVSTTP---PQTGGPPPPPAGG 185

Query: 319 RGPRPDRGPGHRPAGQRGARR-GGAAPGGAGEREHQRQHTGRLRPGGGERAG 471
            GP P  GPG  P G +G +  GG  PGG         H      GGGE  G
Sbjct: 186 AGPGPKPGPG--PGGPKGGKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRG 235

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
 Frame = -1

Query: 458 PPPGRSRPVC*RWCSRSP----APPGA--APPRRAPRCPAGLWPGPR---------SGRG 324
           PPP  S+PV  +    +P    APP A  APP   P   A   PGP          +  G
Sbjct: 98  PPPQESKPVVPQGPGSAPGVSSAPPPAVSAPPANPPTTGAPPGPGPTPTPPPAVPSTAPG 157

Query: 323 PRPPATVRLSL*R*AAQTGQPEPPMAAASGGGMAEGAALTQGAGG 189
           P PP+T    +     QTG P PP A  +G G   G     G GG
Sbjct: 158 PPPPSTPSSGVSTTPPQTGGPPPPPAGGAGPGPKPG----PGPGG 198

EST assemble image

clone accession position 1 MXL099g08_r BP098828 1 480 2 MXL098e01_r BP098748 4 430

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