KCC003512A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003512A_C01 KCC003512A_c01
gcctgacaacatcaagggcaagtcagcggcttgcgccggtctgtgcagctgggtcatcaa
catctgcaagtacttccgtaTCTACCAGGTGGTGGCGCCTAAGCGTGCGGCCCTGGCGGA
GGCGAACAAGAAGTTGGACACCGCCAACAAGAAGCTCAAGGTCATTCGTGACGAGGTGAA
GCGCCTGCAGGACCGTGTGGCGTTGCTGGAGCAGAGCCTCATGAAGGCTACGGAGGACAA
GAACGCCGCCATCGCACAGGCCGACCGCACTGCCCGCAAGGCGCAGATGGCTGAGCGCCT
GATTAACGGCCTGTCGGGCGAGAACACTCGCTGGGGCGCCGAAATCAAGCGGCTGGAGAG
CCTGGAGGGCCGCCTGGTGGGCGACGTGCTCATCGCCTCCGCCTTCGTGTCGTACGCCGG
CCCCTTCAACATGCAGTTCCGCAAGAGCCTGGTGGACGAGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003512A_C01 KCC003512A_c01
         (462 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm gi|7...   299  1e-80
pir||T08164 dynein alpha heavy chain - Chlamydomonas reinhardtii...   139  1e-32
sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm (DH...   139  1e-32
sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary gi|85326|pir||S1...   129  1e-29
prf||1714373A dynein:SUBUNIT=beta heavy chain                         129  1e-29

>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm gi|7484362|pir||T08030 dynein
            beta heavy chain - Chlamydomonas reinhardtii
            gi|514215|gb|AAA19956.1| dynein beta heavy chain
          Length = 4568

 Score =  299 bits (765), Expect = 1e-80
 Identities = 153/153 (100%), Positives = 153/153 (100%)
 Frame = +2

Query: 2    PDNIKGKSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVK 181
            PDNIKGKSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVK
Sbjct: 3306 PDNIKGKSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVK 3365

Query: 182  RLQDRVALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLES 361
            RLQDRVALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLES
Sbjct: 3366 RLQDRVALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLES 3425

Query: 362  LEGRLVGDVLIASAFVSYAGPFNMQFRKSLVDE 460
            LEGRLVGDVLIASAFVSYAGPFNMQFRKSLVDE
Sbjct: 3426 LEGRLVGDVLIASAFVSYAGPFNMQFRKSLVDE 3458

>pir||T08164 dynein alpha heavy chain - Chlamydomonas reinhardtii  (fragment)
          Length = 2405

 Score =  139 bits (351), Expect = 1e-32
 Identities = 69/147 (46%), Positives = 95/147 (63%)
 Frame = +2

Query: 20   KSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVKRLQDRV 199
            KSAA AGLC W +NI KY+ + Q V PKR  LA AN KL+ AN  L  + ++V  L  +V
Sbjct: 2010 KSAAAAGLCEWAVNIIKYYDVVQEVEPKRQELAAANAKLEEANVTLAAVEEKVALLNAKV 2069

Query: 200  ALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLESLEGRLV 379
              LEQ   +A +DK AAI +++R  RK ++A RLIN L+ E  RW   +++L      L 
Sbjct: 2070 QELEQQYKEANDDKEAAIRESERCQRKLELANRLINALASEGERWALTVEQLRKSYEVLT 2129

Query: 380  GDVLIASAFVSYAGPFNMQFRKSLVDE 460
            GD+L+A+AFVSYAGPF  +FR  ++D+
Sbjct: 2130 GDMLLAAAFVSYAGPFTAKFRAHVIDD 2156

>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm (DHC alpha)
            gi|6007859|gb|AAA57316.2| dynein heavy chain alpha
            [Chlamydomonas reinhardtii]
          Length = 4499

 Score =  139 bits (351), Expect = 1e-32
 Identities = 69/147 (46%), Positives = 95/147 (63%)
 Frame = +2

Query: 20   KSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVKRLQDRV 199
            KSAA AGLC W +NI KY+ + Q V PKR  LA AN KL+ AN  L  + ++V  L  +V
Sbjct: 3151 KSAAAAGLCEWAVNIIKYYDVVQEVEPKRQELAAANAKLEEANVTLAAVEEKVALLNAKV 3210

Query: 200  ALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLESLEGRLV 379
              LEQ   +A +DK AAI +++R  RK ++A RLIN L+ E  RW   +++L      L 
Sbjct: 3211 QELEQQYKEANDDKEAAIRESERCQRKLELANRLINALASEGERWALTVEQLRKSYEVLT 3270

Query: 380  GDVLIASAFVSYAGPFNMQFRKSLVDE 460
            GD+L+A+AFVSYAGPF  +FR  ++D+
Sbjct: 3271 GDMLLAAAFVSYAGPFTAKFRAHVIDD 3297

>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary gi|85326|pir||S17231 dynein beta heavy
            chain, ciliary - sea urchin (Anthocidaris crassispina)
            gi|217203|dbj|BAA00827.1| dynein beta-heavy chain
            [Anthocidaris crassispina]
          Length = 4466

 Score =  129 bits (325), Expect = 1e-29
 Identities = 67/152 (44%), Positives = 90/152 (59%)
 Frame = +2

Query: 2    PDNIKGKSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVK 181
            P+ IKGKS A  GLCSWV+NI K++ +Y  V PKR AL +AN +L  A  KL +I+ ++ 
Sbjct: 3232 PEYIKGKSLAAGGLCSWVVNIVKFYNVYCDVEPKRIALQKANDELKAAQDKLALIKAKIA 3291

Query: 182  RLQDRVALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLES 361
             L   +A L     KAT DK     +A+ T+R   +A RL+ GL+ EN RWG  +   + 
Sbjct: 3292 ELDANLAELTAQFEKATSDKLKCQQEAEATSRTITLANRLVGGLASENVRWGEAVANFKI 3351

Query: 362  LEGRLVGDVLIASAFVSYAGPFNMQFRKSLVD 457
             E  L GDVL+ +AFVSY G F   +R  L D
Sbjct: 3352 QEKTLPGDVLLITAFVSYIGCFTKNYRVDLQD 3383

>prf||1714373A dynein:SUBUNIT=beta heavy chain
          Length = 4466

 Score =  129 bits (325), Expect = 1e-29
 Identities = 67/152 (44%), Positives = 90/152 (59%)
 Frame = +2

Query: 2    PDNIKGKSAACAGLCSWVINICKYFRIYQVVAPKRAALAEANKKLDTANKKLKVIRDEVK 181
            P+ IKGKS A  GLCSWV+NI K++ +Y  V PKR AL +AN +L  A  KL +I+ ++ 
Sbjct: 3232 PEYIKGKSLAAGGLCSWVVNIVKFYNVYCDVEPKRIALQKANDELKAAQDKLALIKAKIA 3291

Query: 182  RLQDRVALLEQSLMKATEDKNAAIAQADRTARKAQMAERLINGLSGENTRWGAEIKRLES 361
             L   +A L     KAT DK     +A+ T+R   +A RL+ GL+ EN RWG  +   + 
Sbjct: 3292 ELDANLAELTAQFEKATSDKLKCQQEAEATSRTITLANRLVGGLASENVRWGEAVANFKI 3351

Query: 362  LEGRLVGDVLIASAFVSYAGPFNMQFRKSLVD 457
             E  L GDVL+ +AFVSY G F   +R  L D
Sbjct: 3352 QEKTLPGDVLLITAFVSYIGCFTKNYRVDLQD 3383



EST assemble image


clone accession position
1 MXL095g12_r BP098581 1 367
2 MXL095c03_r BP098550 143 462




Chlamydomonas reinhardtii
Kazusa DNA Research Institute