KCC003510A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003510A_C01 KCC003510A_c01
GACCCCAGAAATAAGCTTGCACCACAACGGACATACTAGCCATCCCTGTAGCCTTCCACA
GAGTATGACGACCATCTGAGAAAAGATTGCCTTCTCCATATTTGCAATATCTTGAATGCA
TGAATGCCATGCGCTTAACGCTGGACTGCTCCCTAGGTTCGCAGTTCATGCCGGGATGCA
GCTCTAGGCGGCAGCCGAGCGCTGTTTCAAGCCCATCTGTGCTGCTACATGTCCAGCGAT
GCGGTCTGCTGGGAAACAGTGGTCATATCCGGTACTTCGGGCCTATGGGCTCGGGTCCTA
GAACCATCGGCCTTGACAGCCCCACCACGACCATACGTAGCGCTGCCCGGGACCAGCGGC
AGCTGTACGAGGTGGAGGGGCGTGGCACGGTGCCGTTTGACCACTACAAGGAGGGTTCCC
GCCACGCACGTCGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003510A_C01 KCC003510A_c01
         (435 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM01142.1|AC108884_24 Hypothetical protein [Oryza sativa (ja...    36  0.11
ref|XP_214225.2| similar to Lysyl oxidase homolog 2 precursor (L...    32  1.5
gb|AAL05526.2|AF399919_13 PilV [Escherichia coli]                      32  2.6
pir||F96580 hypothetical protein F15I1.9 [imported] - Arabidopsi...    32  2.6
gb|AAF86243.2| killer-cell Ig-like receptor [Pan troglodytes]          32  2.6

>gb|AAM01142.1|AC108884_24 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|21263217|gb|AAM44894.1|AC122144_17 Hypothetical
           protein [Oryza sativa (japonica cultivar-group)]
           gi|31431897|gb|AAP53609.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 386

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 36/100 (36%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
 Frame = -1

Query: 426 RGGN----PPCSGQTAPCH--APPPRTAAAGPGQ---RYVWSWWGCQGR----------- 307
           RGG+    PP SG  AP H    PPR + AGP +   R   S  GCQGR           
Sbjct: 248 RGGSGKRAPPVSGTRAPVHRGPGPPRRSTAGPREPTVRIGPSRSGCQGRRGWGTARHKVG 307

Query: 306 WF*DPSP*ARSTGYDHCFPADRIAGHVAAQMGLKQRSAAA 187
           W   P+  AR  G+    PA   AG    + G ++ S AA
Sbjct: 308 W---PNDGARRRGHPRRRPATAPAG----ESGARESSGAA 340

>ref|XP_214225.2| similar to Lysyl oxidase homolog 2 precursor (Lysyl oxidase-like
           protein 2) (Lysyl oxidase related protein 2) (Lysyl
           oxidase-related protein WS9-14) [Rattus norvegicus]
          Length = 886

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/54 (38%), Positives = 28/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 123 NAMRLTLDCSLGSQFMPGCSSRRQPS-----AVSSPSVLLHVQRCGLLGNSGHI 269
           NA+  TL CS G   +PG SSR++P      AV+  +V      C  L N+G I
Sbjct: 396 NALFCTLGCSNGKARIPGPSSRKRPQNPSSMAVTKRTVTSAFPLCCCLANTGLI 449

>gb|AAL05526.2|AF399919_13 PilV [Escherichia coli]
          Length = 456

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
 Frame = +1

Query: 262 VISGTSGLWARVLE-------PSALTAPPRPYVALPGTSGSCTRWRGVAR----CRLTTT 408
           ++S  SG+WA           P     PP+ Y+ + G S SC+R+  +AR    C+L   
Sbjct: 324 ILSCQSGMWAGFESYPVGSPIPWPSATPPQGYLVMNGQSFSCSRYPQLARAYPGCKLPDL 383

Query: 409 RR 414
           RR
Sbjct: 384 RR 385

>pir||F96580 hypothetical protein F15I1.9 [imported] - Arabidopsis thaliana
           gi|4587542|gb|AAD25773.1|AC006577_9 Belongs to the
           PF|00657 Lipase/Acylhydrolase with GDSL-motif family.
           ESTs gb|T45815, gb|T45130 and gb|Z38046 come from this
           gene. [Arabidopsis thaliana]
          Length = 426

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = -3

Query: 121 MHSRYCKYGEGNLFSDGRHTLWKATGM 41
           +HSR C+Y    LF DGRH   KA  M
Sbjct: 313 VHSRLCEYQRSYLFFDGRHNTEKAQEM 339

>gb|AAF86243.2| killer-cell Ig-like receptor [Pan troglodytes]
          Length = 455

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 23/71 (32%), Positives = 30/71 (41%)
 Frame = -3

Query: 343 ALRMVVVGLSRPMVLGPEPIGPKYRI*PLFPSRPHRWTCSSTDGLETALGCRLELHPGMN 164
           A+R V   L     LGP   G  YR    FP  P+ W+ SS   L +  G      P   
Sbjct: 268 AVRSVNGTLQADFPLGPATHGGTYRCFGSFPHSPYEWSNSSDPLLVSVTGNPSSSWPSPT 327

Query: 163 CEPREQSSVKR 131
            EP  +S ++R
Sbjct: 328 -EPSSKSGIRR 337



EST assemble image


clone accession position
1 MXL092a03_r BP098349 1 302
2 MXL093g12_r BP098471 1 435




Chlamydomonas reinhardtii
Kazusa DNA Research Institute