KCC003509A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003509A_C01 KCC003509A_c01
ggacaccGCACATTCAAAGCCGACACTATCAAAGCAGGCCCTACGAACCTCACAGTTACG
TCAGTACAATCGTCGAACGCTGCAAAAATGCCGCGCGTTAAGTCGCCTTCGCAGGCTGAG
ATTAGCAGCAACCCTCGCGAGTTTGCGCTGCTCGCCCAGGCGGCCCCCAACGGCGATGTG
GACCCGGAGGTCCTGAGCCAGTACATCAAGCTCTATGGCCAGCCCTCAGCCAGCGTGCCT
CAGGGTGAAATCACCTTTGCGGAATTCGCCGCCATGTTCAGCCGCCCTGCCGGGGGCGAC
AAGCCCGCCAACAACTGCGTGGGTTATGCGGCGCTTGACAAATCGGGCGTGCTTGCGCCC
TACTCCTTTGATCGCCGGCCGGTAGGCCCCGGTGATGTGCGCATTCAGATCACGCATGCG
GGCATCTGCCACAGCGACCTGCACCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003509A_C01 KCC003509A_c01
         (447 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00079129.1| COG1064: Zn-dependent alcohol dehydrogenases ...    62  2e-09
ref|NP_615373.1| zinc-binding alcohol dehydrogenase [Methanosarc...    61  3e-09
gb|AAK59401.1| alcohol dehydrogenase [Myxococcus xanthus]              60  9e-09
sp|P30359|CAD4_TOBAC Cinnamyl-alcohol dehydrogenase (CAD) gi|282...    59  1e-08
sp|P30360|CAD9_TOBAC Cinnamyl-alcohol dehydrogenase (CAD) gi|100...    58  3e-08

>ref|ZP_00079129.1| COG1064: Zn-dependent alcohol dehydrogenases [Methanosarcina
           barkeri]
          Length = 353

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 25/42 (59%), Positives = 32/42 (75%)
 Frame = +1

Query: 322 GYAALDKSGVLAPYSFDRRPVGPGDVRIQITHAGICHSDLHQ 447
           GYA  D+SG L P+SF+RRPVG  D+ I I + G+CHSD+HQ
Sbjct: 9   GYAGKDESGKLVPWSFERRPVGDNDILIDIKYCGVCHSDIHQ 50

>ref|NP_615373.1| zinc-binding alcohol dehydrogenase [Methanosarcina acetivorans str.
           C2A] gi|19914185|gb|AAM03853.1| zinc-binding alcohol
           dehydrogenase [Methanosarcina acetivorans str. C2A]
          Length = 375

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/42 (59%), Positives = 32/42 (75%)
 Frame = +1

Query: 322 GYAALDKSGVLAPYSFDRRPVGPGDVRIQITHAGICHSDLHQ 447
           GYA  D+SG L P+SF+RRPVG  D+ I I + G+CHSD+HQ
Sbjct: 30  GYAGKDESGKLVPWSFERRPVGNNDILIDIKYCGVCHSDIHQ 71

>gb|AAK59401.1| alcohol dehydrogenase [Myxococcus xanthus]
          Length = 349

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +1

Query: 322 GYAALDKSGVLAPYSFDRRPVGPGDVRIQITHAGICHSDLHQ 447
           GYAA D    LAP+ F+RR  GP DV+I+I + G+CHSDLHQ
Sbjct: 6   GYAAQDAKSPLAPFQFERREPGPSDVQIEILYCGVCHSDLHQ 47

>sp|P30359|CAD4_TOBAC Cinnamyl-alcohol dehydrogenase (CAD) gi|282955|pir||S23525
           cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) CAD14 -
           common tobacco gi|19839|emb|CAA44216.1| cinnamyl-alcohol
           dehydrogenase [Nicotiana tabacum]
          Length = 357

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 24/52 (46%), Positives = 36/52 (69%)
 Frame = +1

Query: 292 GGDKPANNCVGYAALDKSGVLAPYSFDRRPVGPGDVRIQITHAGICHSDLHQ 447
           GG +     +G+AA D SGVL+PY++  R  GP DV +++ + G+CH+DLHQ
Sbjct: 2   GGLEVEKTTIGWAARDPSGVLSPYTYTLRNTGPEDVEVKVLYCGLCHTDLHQ 53

>sp|P30360|CAD9_TOBAC Cinnamyl-alcohol dehydrogenase (CAD) gi|100314|pir||S23526
           cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) CAD19 -
           common tobacco gi|19841|emb|CAA44217.1| cinnamyl-alcohol
           dehydrogenase [Nicotiana tabacum]
          Length = 357

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 35/45 (76%)
 Frame = +1

Query: 313 NCVGYAALDKSGVLAPYSFDRRPVGPGDVRIQITHAGICHSDLHQ 447
           + +G+AA D SG+L+PY++  R  GP DV++++ + G+CHSDLHQ
Sbjct: 9   SAIGWAARDPSGLLSPYTYTLRNTGPEDVQVKVLYCGLCHSDLHQ 53



EST assemble image


clone accession position
1 MXL096b09_r BP098605 1 451
2 MX247h02_r BP091984 6 332
3 MXL089b09_r BP098198 8 379
4 MXL090f04_r BP098272 8 383




Chlamydomonas reinhardtii
Kazusa DNA Research Institute