KCC003502A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003502A_C01 KCC003502A_c01
gtactgtcgttgggcccaacggccaggagtaccgcctccacagcctgctgcttgcatacc
acagcgagttcttccgacgcGCCCTGGGCTCGGAGTTTGCGGAGGGCGCGGCGCGGCGTA
TCGTGTTGGGGTTCGAGGACAGCGGCGACACGTGGCCTCTGCTGATTGAATACTTCTACA
CAGAGGAGATCACCCTGACGGACGCGAACGTGCTGGCGCTGTTTGCGGCGTCCAGTGAGC
TGCTCATACCTGCCATACAGGACTTTTTGCGCCGACTTCGCGCAGAACAGCCTGGAGCCC
AGCAATGCCCTGTCCTTCCTGCGCCAGGCCGTGCAGTACAACTGCGACGCCTTCCGCACC
TCCTGCGTGACGCTGGTCGCCACCTCCTTCAACACATGCTGCGGCAAGTCCACGGACGGA
CTGCCGGTGGAGGTGATCCAGGAGATCTTGGACCACCCGCAGTTTGTTCGTACAGACGGA
GGAGCAGGTGCTGCTGTTCGTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003502A_C01 KCC003502A_c01
         (503 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O60662|KRP1_HUMAN Kelch-related protein 1 (Kel-like protein 2...    44  8e-07
ref|NP_006054.1| sarcomeric muscle protein [Homo sapiens] gi|304...    44  8e-07
ref|NP_476539.1| sarcomeric muscle protein [Rattus norvegicus] g...    43  2e-06
ref|NP_115894.1| T-cell activation kelch repeat protein [Homo sa...    52  3e-06
gb|AAH43951.1| Unknown (protein for IMAGE:5570721) [Xenopus laevis]    43  4e-06

>sp|O60662|KRP1_HUMAN Kelch-related protein 1 (Kel-like protein 23) (Sarcosin)
           gi|12330696|gb|AAG52886.1|AF333387_1 Kel-like protein 23
           [Homo sapiens] gi|16306813|gb|AAH06534.1| SARCOSIN
           protein [Homo sapiens]
          Length = 606

 Score = 44.3 bits (103), Expect(2) = 8e-07
 Identities = 26/73 (35%), Positives = 38/73 (51%)
 Frame = +3

Query: 39  HSLLLAYHSEFFRRALGSEFAEGAARRIVLGFEDSGDTWPLLIEYFYTEEITLTDANVLA 218
           H L+L+  S +FR    SE  E   + +VL   D      L+I+Y Y+  I L D NV  
Sbjct: 47  HRLILSACSPYFREYFLSEIDEAKKKEVVLDNVDPA-ILDLIIKYLYSASIDLNDGNVQD 105

Query: 219 LFAASSELLIPAI 257
           +FA +S   IP++
Sbjct: 106 IFALASRFQIPSV 118

 Score = 29.6 bits (65), Expect(2) = 8e-07
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
 Frame = +1

Query: 262 TFCADFAQNSLEPSNALSFLRQAVQYNCDAFRTSCVTLVATSFNTCCGK----------- 408
           T C  + Q  L P N L+ LR  +  +C     S    V+  F   C +           
Sbjct: 120 TVCVSYLQKRLAPGNCLAILRLGLLLDCPRLAISAREFVSDRFVQICKEEDFMQLSPQEL 179

Query: 409 ----STDGLPVEVIQEILDH-PQFVRTD 477
               S D L VE  + + +   ++VRTD
Sbjct: 180 ISVISNDSLNVEKEEAVFEAVMKWVRTD 207

>ref|NP_006054.1| sarcomeric muscle protein [Homo sapiens] gi|3047308|gb|AAC13686.1|
           sarcosin [Homo sapiens]
          Length = 596

 Score = 44.3 bits (103), Expect(2) = 8e-07
 Identities = 26/73 (35%), Positives = 38/73 (51%)
 Frame = +3

Query: 39  HSLLLAYHSEFFRRALGSEFAEGAARRIVLGFEDSGDTWPLLIEYFYTEEITLTDANVLA 218
           H L+L+  S +FR    SE  E   + +VL   D      L+I+Y Y+  I L D NV  
Sbjct: 37  HRLILSACSPYFREYFLSEIDEAKKKEVVLDNVDPA-ILDLIIKYLYSASIDLNDGNVQD 95

Query: 219 LFAASSELLIPAI 257
           +FA +S   IP++
Sbjct: 96  IFALASRFQIPSV 108

 Score = 29.6 bits (65), Expect(2) = 8e-07
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
 Frame = +1

Query: 262 TFCADFAQNSLEPSNALSFLRQAVQYNCDAFRTSCVTLVATSFNTCCGK----------- 408
           T C  + Q  L P N L+ LR  +  +C     S    V+  F   C +           
Sbjct: 110 TVCVSYLQKRLAPGNCLAILRLGLLLDCPRLAISAREFVSDRFVQICKEEDFMQLSPQEL 169

Query: 409 ----STDGLPVEVIQEILDH-PQFVRTD 477
               S D L VE  + + +   ++VRTD
Sbjct: 170 ISVISNDSLNVEKEEAVFEAVMKWVRTD 197

>ref|NP_476539.1| sarcomeric muscle protein [Rattus norvegicus]
           gi|14285508|sp|Q9ER30|KRP1_RAT Kelch-related protein 1
           (Kel-like protein 23) (Sarcosin)
           gi|10120319|emb|CAC08185.1| kelch related protein 1
           [Rattus norvegicus]
          Length = 606

 Score = 43.1 bits (100), Expect(2) = 2e-06
 Identities = 26/78 (33%), Positives = 39/78 (49%)
 Frame = +3

Query: 24  QEYRLHSLLLAYHSEFFRRALGSEFAEGAARRIVLGFEDSGDTWPLLIEYFYTEEITLTD 203
           + +  H L+L+  S +FR    SE  E   + + L   D      L+I+Y Y+  I L D
Sbjct: 42  KSFPCHRLILSACSPYFREYFLSEIEEEKKKEMALDNVDPA-ILDLIIKYLYSASIDLND 100

Query: 204 ANVLALFAASSELLIPAI 257
            NV  +FA SS   IP++
Sbjct: 101 GNVQDIFALSSRFQIPSV 118

 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 14/47 (29%), Positives = 19/47 (39%)
 Frame = +1

Query: 262 TFCADFAQNSLEPSNALSFLRQAVQYNCDAFRTSCVTLVATSFNTCC 402
           T C  + Q  L P N L+ LR  +  +C     S    V+  F   C
Sbjct: 120 TVCVSYLQKRLAPGNCLAILRLGLLLDCPRLAISAREFVSDRFVQIC 166

>ref|NP_115894.1| T-cell activation kelch repeat protein [Homo sapiens]
           gi|21205870|gb|AAM43839.1|AF385438_1 T-cell activation
           kelch repeat protein; TA-KRP [Homo sapiens]
          Length = 575

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +3

Query: 18  NGQEYRLHSLLLAYHSEFFRRALGSEFAEGAARRI-VLGFEDSGDTWPLLIEYFYTEEIT 194
           +G+ +  H  +LA  S +FR    S   E   + + ++G E   ++  L++ Y YT  + 
Sbjct: 31  HGKTFSCHRNVLAAISPYFRSMFTSGLTESTQKEVRIVGVE--AESMDLVLNYAYTSRVI 88

Query: 195 LTDANVLALFAASSELLIPAIQD 263
           LT+ANV ALF A+S   IP+IQD
Sbjct: 89  LTEANVQALFTAASIFQIPSIQD 111

>gb|AAH43951.1| Unknown (protein for IMAGE:5570721) [Xenopus laevis]
          Length = 630

 Score = 43.1 bits (100), Expect(2) = 4e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%)
 Frame = +3

Query: 39  HSLLLAYHSEFFRRALGSEFAEGAARRIVLGFEDSGDTWPLLIEYFYTEEITLTDANVLA 218
           H L+LA  S +FR    S+ AE   + + L   D   T   +++Y Y+ +I L D+NV  
Sbjct: 71  HRLILAACSPYFREFFLSDEAEEKKKNVELDNVDPS-TMEAILKYLYSADIDLNDSNVQD 129

Query: 219 LFAASSELLIPAI 257
           +FA +S   IP++
Sbjct: 130 IFALASRYQIPSV 142

 Score = 28.5 bits (62), Expect(2) = 4e-06
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +1

Query: 262 TFCADFAQNSLEPSNALSFLRQAVQYNCDAFRTSCVTLVATSFNTCCGK 408
           T C  + Q  L PSN L+  R  +  +C     +    V   F   C +
Sbjct: 144 TVCVTYLQRRLSPSNCLAIFRLGLLLDCPRLAVTARDYVCDRFMQICNE 192



EST assemble image


clone accession position
1 MXL074c09_r BP097351 1 436
2 MXL078c07_r BP097598 243 503




Chlamydomonas reinhardtii
Kazusa DNA Research Institute