KCC003500A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003500A_C01 KCC003500A_c01
CAACAAGGAAAAATGACGCTGGTCGTCGCTGTCCTTCTCGCCGCGCTGCTGGTCGCCAGC
GCGCAGGCTCAGGGCGCTCTGAAGTGCCAGGCCACCCTGAAGGGCTGGGCTTACCTGCCT
GCCGCTGCCAAGGTCAAGGTGCCTTCGGACGCGCCTAGCTACTTTCGTGTCACCGGCCGC
TTCGCTGGCCCCGGCAACCGCCGCAATGACACCATCGGCGCCCTCACCAACTGCGCCGGC
GCCAACCCCACTCGCTGCACGGAGTACAAGCTGCCCTTCAATGACCAGGCGGTCCAGGGC
TTCAGCGGCATCAAGACCATCCGTGATGCCGCCGGCAAGCCCACCGACCAGTTCTGGGTG
ATCTCCGACAACGGTCTGGGCAGCCGCCGCACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003500A_C01 KCC003500A_c01
         (393 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM66146.1|AF299112_2 glycerophosphoryl diester phosphodieste...    81  4e-15
ref|NP_385295.1| HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Sinorhizob...    76  1e-13
ref|NP_773710.1| blr7070 [Bradyrhizobium japonicum] gi|27355351|...    72  2e-12
ref|ZP_00015013.1| COG4222: Uncharacterized protein conserved in...    70  7e-12
ref|ZP_00009088.1| COG4222: Uncharacterized protein conserved in...    69  1e-11

>gb|AAM66146.1|AF299112_2 glycerophosphoryl diester phosphodiesterase-like protein [Rhizobium
           etli]
          Length = 287

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 44/114 (38%), Positives = 62/114 (53%)
 Frame = +1

Query: 46  LLVASAQAQGALKCQATLKGWAYLPAAAKVKVPSDAPSYFRVTGRFAGPGNRRNDTIGAL 225
           +L+A   +    +  A L   A LPA   V  P+DAP + + +G+F  P  +R + +G +
Sbjct: 13  ILIAGPVSADQQQFPAKLAAQAILPANTMVAAPADAPDFLKHSGKFTTPDRKRTEALGTV 72

Query: 226 TNCAGANPTRCTEYKLPFNDQAVQGFSGIKTIRDAAGKPTDQFWVISDNGLGSR 387
               GA   R T+ KLPF  Q +QGFSGIKT+ D        FW +SDNG GS+
Sbjct: 73  PGKDGA---RVTDLKLPFVGQPIQGFSGIKTMADGT------FWTLSDNGFGSK 117

>ref|NP_385295.1| HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Sinorhizobium meliloti]
           gi|15074121|emb|CAC45768.1| HYPOTHETICAL SIGNAL PEPTIDE
           PROTEIN [Sinorhizobium meliloti]
          Length = 452

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 47/126 (37%), Positives = 67/126 (52%), Gaps = 1/126 (0%)
 Frame = +1

Query: 13  MTLVVAVLLAALLVASAQAQGALKC-QATLKGWAYLPAAAKVKVPSDAPSYFRVTGRFAG 189
           MT  +   +A  L+AS+ A    K   A L+  A LPA   V  P+DA  Y + +G+F+ 
Sbjct: 1   MTKSILAAMALTLLASSAALAEEKAFPARLEAHAILPANTIVAAPADAADYLKTSGKFST 60

Query: 190 PGNRRNDTIGALTNCAGANPTRCTEYKLPFNDQAVQGFSGIKTIRDAAGKPTDQFWVISD 369
              +R   +G++   AG +  R T   LPFN Q +QGFSGIK + D        FW +SD
Sbjct: 61  ADRKRAAELGSV---AGKDGVRPTGLSLPFNGQPMQGFSGIKAMEDGT------FWSLSD 111

Query: 370 NGLGSR 387
           NG G++
Sbjct: 112 NGFGNK 117

>ref|NP_773710.1| blr7070 [Bradyrhizobium japonicum] gi|27355351|dbj|BAC52335.1|
           blr7070 [Bradyrhizobium japonicum USDA 110]
          Length = 451

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 43/126 (34%), Positives = 66/126 (52%)
 Frame = +1

Query: 10  KMTLVVAVLLAALLVASAQAQGALKCQATLKGWAYLPAAAKVKVPSDAPSYFRVTGRFAG 189
           + T +  V    L  ++A AQ   +  A L G   +PA + +  P+DAP+  + +G++  
Sbjct: 2   RATFLATVATIILTASTALAQSEGEFPARLAGHVVMPAESFIDAPADAPADLKTSGKYTT 61

Query: 190 PGNRRNDTIGALTNCAGANPTRCTEYKLPFNDQAVQGFSGIKTIRDAAGKPTDQFWVISD 369
              +R D +G +    G +  R T   LPF  Q +QG SGIKT+      P   FWVI+D
Sbjct: 62  --GKRVDALGTVM---GKSYERATGVSLPFKGQPLQGHSGIKTM------PDGSFWVITD 110

Query: 370 NGLGSR 387
           NG+G+R
Sbjct: 111 NGMGAR 116

>ref|ZP_00015013.1| COG4222: Uncharacterized protein conserved in bacteria
           [Rhodospirillum rubrum]
          Length = 464

 Score = 70.1 bits (170), Expect = 7e-12
 Identities = 48/119 (40%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
 Frame = +1

Query: 37  LAALLVASAQAQGALKCQATLKGWAYLPAAAKVKVPSDAPSYFRVTGRFAGPGNRRN--D 210
           L A L A AQ     K  A L G A LPA   V+ P+DAP+   V+G+F  PG R +   
Sbjct: 24  LGAALPALAQE----KFPAELAGQAMLPAMTLVQPPADAPAALAVSGKFTLPGQRIDAVG 79

Query: 211 TIGALTNCAGANPTRCTEYKLPFNDQAVQGFSGIKTIRDAAGKPTDQFWVISDNGLGSR 387
           T+   +  +     R T   LPF  Q VQGFSGI+T++D        F VI+DNG G++
Sbjct: 80  TVAGTSFLSDKTAPRPTGLSLPFAGQPVQGFSGIETLKDGT------FRVITDNGFGAK 132

>ref|ZP_00009088.1| COG4222: Uncharacterized protein conserved in bacteria
           [Rhodopseudomonas palustris]
          Length = 451

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 45/123 (36%), Positives = 67/123 (53%)
 Frame = +1

Query: 19  LVVAVLLAALLVASAQAQGALKCQATLKGWAYLPAAAKVKVPSDAPSYFRVTGRFAGPGN 198
           L+ +V + AL  ++A AQ   +  ATL G A LPA + +  P+DAP+  + +G++   G 
Sbjct: 5   LLGSVAVFALATSAALAQTEGEFPATLAGHAVLPATSFIDAPADAPADLKTSGKYT-TGQ 63

Query: 199 RRNDTIGALTNCAGANPTRCTEYKLPFNDQAVQGFSGIKTIRDAAGKPTDQFWVISDNGL 378
           R    + A  +  G +  R T   +PF  Q +QG SGIK +      P   FWV++DNG 
Sbjct: 64  R----VEAQGSVMGKSNGRPTGVSVPFKGQPLQGHSGIKAM------PDGTFWVLTDNGF 113

Query: 379 GSR 387
           GSR
Sbjct: 114 GSR 116



EST assemble image


clone accession position
1 MXL071a03_r BP097155 1 370
2 MXL071b05_r BP097165 1 393




Chlamydomonas reinhardtii
Kazusa DNA Research Institute