KCC003493A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003493A_C01 KCC003493A_c01
CGGAATCCAAGTGTTACACAGCTGCGGTGGGAGTTGCCCCACAGCGCCGCGGCGCCGTCT
GCGGCAACATGTCCGCCCGGCTCCTGCCGCAACAGCCGTAGCAGGCTTGTCGCGACTCGG
TCCTACGAGTTGCGAGCCGCAATGCTAGCCGTGACACCGCAACCTGCGCAACGGCCACTC
CCCGCTGGAGTCAATGCACCCCTCTCCCTCTCGCCTGTCTACGCGTACGTACGCAACAGT
CCGCAGCACTGGTCTACCGGCACCCTACACGGCCCCGTCGCGCACGACCACACCGCACAC
GTCCCGCTCACGCGGGGGAGATGCACACGCCACACGTGAGAGAGTTCGATGAAGTTTAGA
GAGAAACGTGGTTGCCAACCTGCCTACAGCCCGCCCCATACCCGCGTGACGACTCATGCC
TTTCTTCTTTCCCCGGCTCTGTACCCCTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003493A_C01 KCC003493A_c01
         (449 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO22878.1| unknown [Myxococcus xanthus]                            37  0.080
dbj|BAC07123.1| hypothetical protein [Oryza sativa (japonica cul...    35  0.18
ref|ZP_00009508.1| hypothetical protein [Rhodopseudomonas palust...    35  0.18
ref|XP_307769.1| ENSANGP00000012932 [Anopheles gambiae] gi|21291...    34  0.39
gb|AAN28957.1| Wal1 protein [Eremothecium gossypii]                    34  0.39

>gb|AAO22878.1| unknown [Myxococcus xanthus]
          Length = 411

 Score = 36.6 bits (83), Expect = 0.080
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -2

Query: 304 GRVRCGRARRGRVGCR*TSAADCCVRTRRQARGRGVH*LQRGVAVAQVAVSRLALRLATR 125
           GR    R RR R+  R +  AD   RTRR+  GRG H   RGVA  +      + R + R
Sbjct: 188 GRRHGSRRRRRRIADR-SQRADSACRTRRRRGGRGRH---RGVAARRRDADLGSRRWSRR 243

Query: 124 RTESRQACYG----CCGRSRA 74
               R+A +G    C GR  A
Sbjct: 244 AARYRRASWGNRSSCTGRHDA 264

>dbj|BAC07123.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|22293687|dbj|BAC10032.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 139

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 21/64 (32%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
 Frame = +1

Query: 40  HSAAAPSAATCPPGSCRNSRSRLVATRSYELRAAMLAVTPQP---AQRPLPAGV-NAPLS 207
           H A +  AA  PP SC  +R+ L  +     RA +   +P P    +RPLP G  + P+ 
Sbjct: 40  HRAPSRPAAPLPPSSCPPTRAELAPSSCPPTRAELADASPHPRGSGRRPLPPGACSRPVD 99

Query: 208 LSPV 219
           L+ +
Sbjct: 100 LAVI 103

>ref|ZP_00009508.1| hypothetical protein [Rhodopseudomonas palustris]
          Length = 985

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 29/88 (32%), Positives = 40/88 (44%), Gaps = 7/88 (7%)
 Frame = +1

Query: 85  CRNSRSRLVATRSYELRAAMLAVTPQPAQRPLPAGVNAPLSLSPV-YAYVRNSPQHWSTG 261
           C +S  +   T    LR A+ AVT        PA +    SL P+ YA V N+P+ W +G
Sbjct: 80  CASSDGKFAGT----LRGALGAVTRSCRGVRRPAWLQGGASLPPLCYARVSNNPERWLSG 135

Query: 262 TLHGP--VAHDHTA----HVPLTRGRCT 327
           ++  P    HD  A    H+    GR T
Sbjct: 136 SIPDPSQAPHDEEAVARLHLDKAIGRAT 163

>ref|XP_307769.1| ENSANGP00000012932 [Anopheles gambiae] gi|21291427|gb|EAA03572.1|
           ENSANGP00000012932 [Anopheles gambiae str. PEST]
          Length = 1129

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 24/77 (31%), Positives = 31/77 (40%)
 Frame = +3

Query: 177 TPRWSQCTPLPLACLRVRTQQSAALVYRHPTRPRRARPHRTRPAHAGEMHTPHVREFDEV 356
           TP  ++ TP PL C    T       +R   RP R  P  T P       T  V E +E 
Sbjct: 433 TPTTTEVTPAPLRCFPGSTDPRCPTTFRPSVRPTRPPPSPTTP----RFSTTTVEEEEE- 487

Query: 357 *RETWLPTCLQPAPYPR 407
             +  +P CL  +  PR
Sbjct: 488 --DDSVPNCLLRSNDPR 502

>gb|AAN28957.1| Wal1 protein [Eremothecium gossypii]
          Length = 732

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 158 RNLRNGHSPLESMHPSPSRLSTRTYATVRSTGLPAPYTAPSRTTTPHTSRSRGG--DAHA 331
           + + + HSP++ M P P      T +  +  G P P   P R   P   R R G   +HA
Sbjct: 429 QQMASPHSPMQYMSPPPPPARQMTPSPTQQHGAPPPPPPPRRGPAPPPPRKRAGPVTSHA 488

Query: 332 T 334
           T
Sbjct: 489 T 489



EST assemble image


clone accession position
1 MXL059c07_r BP096472 1 483
2 MXL082e02_r BP097860 32 403
3 MXL089f03_r BP098223 33 360




Chlamydomonas reinhardtii
Kazusa DNA Research Institute