Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003487A_C01 KCC003487A_c01
(451 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22973.1|AF125672_1 silencing mediator of retinoic acid and... 35 0.23
ref|NP_006303.1| nuclear receptor co-repressor 2; silencing medi... 35 0.23
gb|AAB50847.1| T3 receptor-associating cofactor-1; TRAC-1 [Homo ... 35 0.23
pir||S60255 transcription co-repressor SMRT - human gi|1045655|g... 35 0.23
gb|AAB81653.1| calcium-activated potassium channel rSK3 [Rattus ... 30 0.83
>gb|AAD22973.1|AF125672_1 silencing mediator of retinoic acid and thyroid hormone receptor
extended isoform [Homo sapiens]
Length = 2507
Score = 35.0 bits (79), Expect = 0.23
Identities = 30/102 (29%), Positives = 39/102 (37%), Gaps = 7/102 (6%)
Frame = +2
Query: 113 PLGARQLSHAPHRP-----RHSTPAVGLSRLYNFTSIVQTCSFNCTSPVIYQ--TCLLNN 271
P G LS PH P TPA + RL + Q S +S + L
Sbjct: 1718 PRGIIDLSQVPHLPVLVPPTPGTPATAMDRLAYLPTAPQPFSSRHSSSPLSPGGPTHLTK 1777
Query: 272 VTTTCSRNSQRPTHRRRIHDSQRGLCRLANPAAVLAVPLYRP 397
TTT S +R R R D +R L + V P++RP
Sbjct: 1778 PTTTSSSERERDRDRERDRDREREKSILTSTTTVEHAPIWRP 1819
>ref|NP_006303.1| nuclear receptor co-repressor 2; silencing mediator for retinoid and
thyroid hormone receptors [Homo sapiens]
gi|12643957|sp|Q9Y618|NCR2_HUMAN Nuclear receptor
co-repressor 2 (N-CoR2) (Silencing mediator of retinoic
acid and thyroid hormone receptor) (SMRT) (SMRTe)
(Thyroid-, retinoic-acid-receptor-associated
co-repressor) (T3 receptor-associating factor) (TRAC)
(CTG repeat protein 26) gi|4454552|gb|AAD20946.1|
silencing mediator of retinoic acid and thyroid hormone
receptor alpha [Homo sapiens]
Length = 2517
Score = 35.0 bits (79), Expect = 0.23
Identities = 30/102 (29%), Positives = 39/102 (37%), Gaps = 7/102 (6%)
Frame = +2
Query: 113 PLGARQLSHAPHRP-----RHSTPAVGLSRLYNFTSIVQTCSFNCTSPVIYQ--TCLLNN 271
P G LS PH P TPA + RL + Q S +S + L
Sbjct: 1728 PRGIIDLSQVPHLPVLVPPTPGTPATAMDRLAYLPTAPQPFSSRHSSSPLSPGGPTHLTK 1787
Query: 272 VTTTCSRNSQRPTHRRRIHDSQRGLCRLANPAAVLAVPLYRP 397
TTT S +R R R D +R L + V P++RP
Sbjct: 1788 PTTTSSSERERDRDRERDRDREREKSILTSTTTVEHAPIWRP 1829
>gb|AAB50847.1| T3 receptor-associating cofactor-1; TRAC-1 [Homo sapiens]
Length = 769
Score = 35.0 bits (79), Expect = 0.23
Identities = 30/102 (29%), Positives = 39/102 (37%), Gaps = 7/102 (6%)
Frame = +2
Query: 113 PLGARQLSHAPHRP-----RHSTPAVGLSRLYNFTSIVQTCSFNCTSPVIYQ--TCLLNN 271
P G LS PH P TPA + RL + Q S +S + L
Sbjct: 26 PRGIIDLSQVPHLPVLVPPTPGTPATAMDRLAYLPTAPQPFSSRHSSSPLSPGGPTHLTK 85
Query: 272 VTTTCSRNSQRPTHRRRIHDSQRGLCRLANPAAVLAVPLYRP 397
TTT S +R R R D +R L + V P++RP
Sbjct: 86 PTTTSSSERERDRDRERDRDREREKSILTSTTTVEHAPIWRP 127
>pir||S60255 transcription co-repressor SMRT - human gi|1045655|gb|AAC50236.1|
silencing mediator of retinoid and thyroid hormone action
Length = 1495
Score = 35.0 bits (79), Expect = 0.23
Identities = 30/102 (29%), Positives = 39/102 (37%), Gaps = 7/102 (6%)
Frame = +2
Query: 113 PLGARQLSHAPHRP-----RHSTPAVGLSRLYNFTSIVQTCSFNCTSPVIYQ--TCLLNN 271
P G LS PH P TPA + RL + Q S +S + L
Sbjct: 706 PRGIIDLSQVPHLPVLVPPTPGTPATAMDRLAYLPTAPQPFSSRHSSSPLSPGGPTHLTK 765
Query: 272 VTTTCSRNSQRPTHRRRIHDSQRGLCRLANPAAVLAVPLYRP 397
TTT S +R R R D +R L + V P++RP
Sbjct: 766 PTTTSSSERERDRDRERDRDREREKSILTSTTTVEHAPIWRP 807
>gb|AAB81653.1| calcium-activated potassium channel rSK3 [Rattus norvegicus]
Length = 732
Score = 30.0 bits (66), Expect(2) = 0.83
Identities = 19/53 (35%), Positives = 25/53 (46%)
Frame = +1
Query: 226 QLYEPSNLPDLPT*QRDDNLLPQFSAAHTQAPHT*QPKGPLPPCQSSGSTCSP 384
QL+ PSN P++ R+DN Q H A H Q G ++GST P
Sbjct: 210 QLFSPSNPPEIIISSREDNHAHQTLLHHPNATHNHQHAG-----TTAGSTTFP 257
Score = 21.9 bits (45), Expect(2) = 0.83
Identities = 10/34 (29%), Positives = 14/34 (40%)
Frame = +3
Query: 120 GPANFHTHHTGPDIVHLRSDCPVCIISHP*CKHA 221
GP H +VH R P I+ CK++
Sbjct: 149 GPGGGSRHRQASPVVHRRDSNPFTEIAMSSCKYS 182
