KCC003486A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003486A_C01 KCC003486A_c01
agggttgtattggactgcctttaccatgaagctcccaactctgtctcgccgcgctctggc
gctggctctgcttggcctggTGGTGCTGGCCGCGACCGGCGTGCACGCCGCTAAGAAGGG
CAGCAAGAAGAAGGTTGCTGCGGATACCACTATCACGCACAAGGTGTACTTCGACGTGGA
GATTGATGGCAAGCCTGAGGGCCGCATTGTGGTTGGCCTGTACGGCAACACCGTGCCCAA
GACCGTGGAGAACTTCCGCGCCCTGTGCACCGGCGAGAAGGGCACTGGCACCTCGGGCAA
GCCGCTGCACTTCAAGAACAGCATCTTCCACCGCATCATCCCCCAGTTCATGATCCAGGG
CGGTGACTTCACCCGCGGCGATGGCACCGGCGGCGAGTCCATCTACGGCTCCCGCTTCCC
CGACGAGAACTTCGCCCTGAAGCACACCGGCCCCGGCGTGCTGTCCATGGCCAACGCCGG
CCCCGACACCAACGGCTCTCAGTTCTTCATCACCACAGTCACCACCAGCTGGCTGGACGG
CCGCCACGTCGTGTTCGGCAAGGTCGTGGAGGGCATGGACGTGGTGTACAAGGTGGAGGC
TGTGGGCACCAGCAGCGGCAAGCCCAGCAAGAAGGTGACCATCGCCGACTCCGGCGAGCT
GCCCCTGTGAACCGCGACTGACACCAAGCAGGAGCAGCAGGAGTGGCGCTGGAGCTGGCT
GTGGGGCGGACGTTGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003486A_C01 KCC003486A_c01
         (737 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP76508.1| cyclophilin [Triticum aestivum] gi|32401384|gb|AA...   298  8e-80
pir||T50837 peptidylprolyl isomerase (EC 5.2.1.8) CYP5 [similari...   295  4e-79
ref|NP_180557.1| cyclophilin [Arabidopsis thaliana] gi|7437323|p...   295  5e-79
ref|NP_200679.1| cyclophilin ROC7 [Arabidopsis thaliana] gi|1127...   294  9e-79
gb|AAM63088.1| cyclophilin [Arabidopsis thaliana]                     293  2e-78

>gb|AAP76508.1| cyclophilin [Triticum aestivum] gi|32401384|gb|AAP80861.1|
           cyclophilin [Triticum aestivum]
          Length = 233

 Score =  298 bits (762), Expect = 8e-80
 Identities = 149/206 (72%), Positives = 164/206 (79%)
 Frame = +2

Query: 50  RALALALLGLVVLAATGVHAAKKGSKKKVAADTTITHKVYFDVEIDGKPEGRIVVGLYGN 229
           RA A   L L ++AAT V A  K S       + +THKVYFD+EIDGKP GR+V+GL+G 
Sbjct: 32  RAPAHLCLWLALVAATLVLAQGKKSNL-----SEVTHKVYFDIEIDGKPAGRVVMGLFGK 86

Query: 230 TVPKTVENFRALCTGEKGTGTSGKPLHFKNSIFHRIIPQFMIQGGDFTRGDGTGGESIYG 409
            VPKT ENFRALCTGEKG G SGKPLH+K S FHRIIP FMIQGGDFT GDG GGESIYG
Sbjct: 87  AVPKTAENFRALCTGEKGMGNSGKPLHYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIYG 146

Query: 410 SRFPDENFALKHTGPGVLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVVEGMDVVY 589
           ++F DENF LKHTGPG LSMANAG DTNGSQFFITTVTTSWLDG+HVVFGKV+ GMDVVY
Sbjct: 147 TKFGDENFKLKHTGPGYLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVY 206

Query: 590 KVEAVGTSSGKPSKKVTIADSGELPL 667
           KVEA G  +G P  KV IADSGE+PL
Sbjct: 207 KVEAXGKQNGTPKSKVVIADSGEVPL 232

>pir||T50837 peptidylprolyl isomerase (EC 5.2.1.8) CYP5 [similarity] -
           Arabidopsis thaliana gi|2443755|gb|AAB71401.1|
           cyclophilin [Arabidopsis thaliana]
          Length = 201

 Score =  295 bits (756), Expect = 4e-79
 Identities = 140/172 (81%), Positives = 149/172 (86%)
 Frame = +2

Query: 152 ITHKVYFDVEIDGKPEGRIVVGLYGNTVPKTVENFRALCTGEKGTGTSGKPLHFKNSIFH 331
           ITHKVYFDVEIDGK  GR+V+GL+G  VPKT ENFRALCTGEKG G SGKPLH+K S FH
Sbjct: 30  ITHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFH 89

Query: 332 RIIPQFMIQGGDFTRGDGTGGESIYGSRFPDENFALKHTGPGVLSMANAGPDTNGSQFFI 511
           RIIP FMIQGGDFT G+G GGESIYG +F DENF LKHTGPGVLSMAN+G DTNGSQFFI
Sbjct: 90  RIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFI 149

Query: 512 TTVTTSWLDGRHVVFGKVVEGMDVVYKVEAVGTSSGKPSKKVTIADSGELPL 667
           TTVTTSWLDGRHVVFGKVV+GMDVVYK+EA G  SG P  KV IADSGELPL
Sbjct: 150 TTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201

>ref|NP_180557.1| cyclophilin [Arabidopsis thaliana] gi|7437323|pir||T02489
           peptidylprolyl isomerase (EC 5.2.1.8) F23F1.12 -
           Arabidopsis thaliana gi|3420055|gb|AAC31856.1|
           cyclophilin [Arabidopsis thaliana]
           gi|15451026|gb|AAK96784.1| cyclophilin [Arabidopsis
           thaliana] gi|23197720|gb|AAN15387.1| cyclophilin
           [Arabidopsis thaliana]
          Length = 201

 Score =  295 bits (755), Expect = 5e-79
 Identities = 139/172 (80%), Positives = 149/172 (85%)
 Frame = +2

Query: 152 ITHKVYFDVEIDGKPEGRIVVGLYGNTVPKTVENFRALCTGEKGTGTSGKPLHFKNSIFH 331
           +THKVYFDVEIDGK  GR+V+GL+G  VPKT ENFRALCTGEKG G SGKPLH+K S FH
Sbjct: 30  VTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFH 89

Query: 332 RIIPQFMIQGGDFTRGDGTGGESIYGSRFPDENFALKHTGPGVLSMANAGPDTNGSQFFI 511
           RIIP FMIQGGDFT G+G GGESIYG +F DENF LKHTGPGVLSMAN+G DTNGSQFFI
Sbjct: 90  RIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFI 149

Query: 512 TTVTTSWLDGRHVVFGKVVEGMDVVYKVEAVGTSSGKPSKKVTIADSGELPL 667
           TTVTTSWLDGRHVVFGKVV+GMDVVYK+EA G  SG P  KV IADSGELPL
Sbjct: 150 TTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201

>ref|NP_200679.1| cyclophilin ROC7 [Arabidopsis thaliana] gi|11270328|pir||T50838
           peptidylprolyl isomerase (EC 5.2.1.8) ROC7 [similarity]
           - Arabidopsis thaliana
           gi|6180043|gb|AAF05760.1|AF192490_1 cyclophilin
           [Arabidopsis thaliana] gi|8843791|dbj|BAA97339.1|
           cyclophilin [Arabidopsis thaliana]
           gi|15081670|gb|AAK82490.1| AT5g58710/mzn1_160
           [Arabidopsis thaliana] gi|20334834|gb|AAM16173.1|
           AT5g58710/mzn1_160 [Arabidopsis thaliana]
           gi|21554366|gb|AAM63473.1| cyclophilin ROC7 [Arabidopsis
           thaliana]
          Length = 204

 Score =  294 bits (753), Expect = 9e-79
 Identities = 149/205 (72%), Positives = 162/205 (78%)
 Frame = +2

Query: 53  ALALALLGLVVLAATGVHAAKKGSKKKVAADTTITHKVYFDVEIDGKPEGRIVVGLYGNT 232
           ++ L L  L++L       AKK SK+ +     ITHKVYFDVEIDGK  GRIV+GL+G T
Sbjct: 4   SVTLLLWSLLLLGTLSAIQAKK-SKENLKE---ITHKVYFDVEIDGKAAGRIVMGLFGKT 59

Query: 233 VPKTVENFRALCTGEKGTGTSGKPLHFKNSIFHRIIPQFMIQGGDFTRGDGTGGESIYGS 412
           VPKTVENFRALCTGEKG G +GK LH+K S FHRIIP FM+QGGDFT G+G GGESIYG 
Sbjct: 60  VPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGE 119

Query: 413 RFPDENFALKHTGPGVLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVVEGMDVVYK 592
           +F DENF LKHTGPG LSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKVV GMDVVYK
Sbjct: 120 KFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYK 179

Query: 593 VEAVGTSSGKPSKKVTIADSGELPL 667
           VEA G  SG P  KV I DSGELPL
Sbjct: 180 VEAEGNQSGTPKSKVVIVDSGELPL 204

>gb|AAM63088.1| cyclophilin [Arabidopsis thaliana]
          Length = 201

 Score =  293 bits (750), Expect = 2e-78
 Identities = 138/172 (80%), Positives = 148/172 (85%)
 Frame = +2

Query: 152 ITHKVYFDVEIDGKPEGRIVVGLYGNTVPKTVENFRALCTGEKGTGTSGKPLHFKNSIFH 331
           +THKVYFDVEIDGK  GR+V+GL+G  VPKT ENFRALCTGEKG G SGKPLH+K S FH
Sbjct: 30  VTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFH 89

Query: 332 RIIPQFMIQGGDFTRGDGTGGESIYGSRFPDENFALKHTGPGVLSMANAGPDTNGSQFFI 511
           RIIP FMIQGGDFT G+G GGESIYG +F DENF LKHTGPGVLSMAN+G D NGSQFFI
Sbjct: 90  RIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDXNGSQFFI 149

Query: 512 TTVTTSWLDGRHVVFGKVVEGMDVVYKVEAVGTSSGKPSKKVTIADSGELPL 667
           TTVTTSWLDGRHVVFGKVV+GMDVVYK+EA G  SG P  KV IADSGELPL
Sbjct: 150 TTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201



EST assemble image


clone accession position
1 MXL054a12_r BP096176 1 383
2 MXL082a09_r BP097831 248 737




Chlamydomonas reinhardtii
Kazusa DNA Research Institute