KCC003478A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003478A_C01 KCC003478A_c01
cttgcttgcattgctgcattctgccaggacattaagacagtacgcggttcgtGGAAGGAA
AAAGAAATGGCATCTTGATGGCATCAACCAGTCGGAAACCGAGAAAAGTCAGTCCTGTTG
GTCATGATGCGCTGCCCACGATGACCGCCCTTCATAAGCCAGCCATTTCCATTTGAGTTC
ATTTGTAAGACGTTGGCAGAGGGGCCTGCTGCCACTATACAGTATTTACTAGGCTCGATA
GAAGAAACAGTGTAGTCGCGCCTGGCCATGGCGGACGTCAAAGCCCTCGACGCCGAGAAG
GCGCACGAGAAAACTCTACAGCATGCCGAGGACTCGCTGTGCAGCGCTATCAAGGATGTG
GATGAGGATGTGCGCCCTCGCAACCCCATCGTCCGGTTCTTCCAATTCCTGGGGAGCTTC
ATGATTCCAGGCATGGGCATGTTCTGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003478A_C01 KCC003478A_c01
         (448 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB96536.1| Pi-transporter homologue A-3 [Chlamydomonas rein...    84  4e-16
dbj|BAB96534.1| Pi-transporter homologue A-1 [Chlamydomonas rein...    46  1e-04
dbj|BAB96535.1| Pi-transporter homologue A-2 [Chlamydomonas rein...    37  0.047
gb|AAG37032.1| bovine leukemia virus receptor BLVRcp130 [Bos tau...    33  0.68
gb|AAG37037.1| bovine leukemia virus receptor BLVRcp176 [Bos tau...    33  0.68

>dbj|BAB96536.1| Pi-transporter homologue A-3 [Chlamydomonas reinhardtii]
          Length = 573

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 43/63 (68%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
 Frame = +1

Query: 268 MADVKA--LDAEKAHEKTLQHAEDSLCSAIKD-VDEDVRPRNPIVRFFQFLGSFMIPGMG 438
           M D K   LDAEK H  TL +AED+LCSA++D   ED+RPRN IVRFFQFL SFMIPG+G
Sbjct: 1   MTDPKGQDLDAEKQHAATLHNAEDTLCSAVQDETAEDLRPRNVIVRFFQFLASFMIPGLG 60

Query: 439 MFC 447
           MFC
Sbjct: 61  MFC 63

>dbj|BAB96534.1| Pi-transporter homologue A-1 [Chlamydomonas reinhardtii]
          Length = 560

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/53 (45%), Positives = 34/53 (63%)
 Frame = +1

Query: 289 DAEKAHEKTLQHAEDSLCSAIKDVDEDVRPRNPIVRFFQFLGSFMIPGMGMFC 447
           D EK   + LQ+AE +L +  K+  E V   NP+ R   F+G+FM+PG+GMFC
Sbjct: 10  DPEKTQLQKLQNAEVTLLTMEKE--EVVVYHNPLWRCLHFMGAFMLPGLGMFC 60

>dbj|BAB96535.1| Pi-transporter homologue A-2 [Chlamydomonas reinhardtii]
          Length = 545

 Score = 37.4 bits (85), Expect = 0.047
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 394 RFFQFLGSFMIPGMGMFC 447
           RFF FL SFMIPG+GMFC
Sbjct: 13  RFFLFLASFMIPGLGMFC 30

>gb|AAG37032.1| bovine leukemia virus receptor BLVRcp130 [Bos taurus]
           gi|11527866|gb|AAG37034.1| bovine leukemia virus
           receptor BLVRcp51 [Bos taurus]
           gi|11527868|gb|AAG37035.1| bovine leukemia virus
           receptor BLVRcp41 [Bos taurus]
           gi|11527874|gb|AAG37038.1| bovine leukemia virus
           receptor BLVRcp198 [Bos taurus]
          Length = 644

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 20/41 (48%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
 Frame = +2

Query: 269 WRTSKPSTPRRRTRKL-YSMPRTRCAALSRMWMRMCALATP 388
           WR + PST RR TRK   S PRTR +   R   RM  L +P
Sbjct: 276 WRRNPPSTRRRNTRKTRRSGPRTRGSPRRRCHQRMRRLLSP 316

>gb|AAG37037.1| bovine leukemia virus receptor BLVRcp176 [Bos taurus]
          Length = 644

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 20/41 (48%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
 Frame = +2

Query: 269 WRTSKPSTPRRRTRKL-YSMPRTRCAALSRMWMRMCALATP 388
           WR + PST RR TRK   S PRTR +   R   RM  L +P
Sbjct: 276 WRRNPPSTRRRNTRKTRRSGPRTRGSPRRRCHQRMRRLLSP 316



EST assemble image


clone accession position
1 MXL046b07_r BP095708 1 376
2 MXL068f11_r BP097013 53 448




Chlamydomonas reinhardtii
Kazusa DNA Research Institute