Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003477A_C01 KCC003477A_c01
(500 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JC6547 high sulfur protein B2E - rat gi|3046871|dbj|BAA2557... 41 0.009
ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens] 40 0.021
ref|XP_284950.1| similar to high sulfur protein B2F [Rattus norv... 40 0.021
ref|NP_889120.1| flagellar hook-length control protein [Bordetel... 39 0.027
gb|AAD41467.1| homeotic protein HB9 [Homo sapiens] 39 0.027
>pir||JC6547 high sulfur protein B2E - rat gi|3046871|dbj|BAA25573.1| high
sulfur protein B2E [Rattus norvegicus]
Length = 188
Score = 40.8 bits (94), Expect = 0.009
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Frame = -1
Query: 440 PACSSSLE*SPQAITRSEC*PFDAGSPGSAS*NEGG-WLCPCRHRW*CAVGTWPCRAYRC 264
P+C + P S C G+ S EGG CR RW C CR
Sbjct: 77 PSCCQTSCCQPTCCQNSSC---QTSCCGTGSGQEGGSGATSCRVRW-CRPD---CRVEGT 129
Query: 263 WLCHPPCAPDS-RQPTCADAAPPPPPACRHRWRAGACRCPGCSCTRE*GDP*CAQPSCA 90
C PPC S PTC CR + +C P C C +P C++PSC+
Sbjct: 130 --CLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQSCCRPACCC--HCCEPSCSKPSCS 184
>ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens]
Length = 208
Score = 39.7 bits (91), Expect = 0.021
Identities = 37/122 (30%), Positives = 43/122 (34%), Gaps = 17/122 (13%)
Frame = -1
Query: 320 CRHRW*CAVGTWPCRAYRCWLCHPPCAPD-SRQPTCADAAPPPPPACRHRWRAGA--CRC 150
CR C PC C P AP P A PP P C W G RC
Sbjct: 17 CRRSTCCCPRPRPCARVASTCCRPRAAPRCPPTPPPGPAWPPRTPTC--CWGPGGPQHRC 74
Query: 149 PGC----SCTRE*GDP*CAQPSCALR*RPAHPAPS----------PRSPTRRFSHCAACR 12
GC +CT P P A R RP P P+ P S R+S C++ R
Sbjct: 75 AGCRHRPACT-----PTTTTPCTARRSRPGCPTPAGAGAHWPAGRPSSARARWSSCSSSR 129
Query: 11 VS 6
+
Sbjct: 130 AT 131
Score = 33.5 bits (75), Expect = 1.5
Identities = 39/136 (28%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Frame = +3
Query: 117 IASLTCA*ASRASTRPCPPPVAARRWRWRRCIGARGLPAVRSARWMTQPA-TISPTGPCS 293
+AS C + P PPP A R C G P R A +PA T + T PC+
Sbjct: 33 VASTCCRPRAAPRCPPTPPPGPAWPPRTPTCCWGPGGPQHRCAGCRHRPACTPTTTTPCT 92
Query: 294 ------HCASPTMAARTKPTAFVSRC*TRRSRVEWS--TLAAGYCLRASLQRRTARWASS 449
C +P A P S R S S T C R + R W S
Sbjct: 93 ARRSRPGCPTPAGAGAHWPAGRPSSARARWSSCSSSRATTCPSTCARPARTRDNLTWMMS 152
Query: 450 SCRMSFRPLSSRTQTG 497
S ++ RPL + + G
Sbjct: 153 S--LTPRPLLASSPWG 166
>ref|XP_284950.1| similar to high sulfur protein B2F [Rattus norvegicus] [Mus
musculus]
Length = 127
Score = 39.7 bits (91), Expect = 0.021
Identities = 34/118 (28%), Positives = 49/118 (40%), Gaps = 1/118 (0%)
Frame = -1
Query: 440 PACSSSLE*SPQAITRSEC*PFDAGSPGSAS*NEGGWLCPCRHRW*CAVGTWPCRAYRCW 261
PA +++ + ++T + C +G G + GG CR RW C CR
Sbjct: 20 PAAATAAHPAALSLTATSCCGTGSGQEGGS----GG--LSCRVRW-CRPD---CRVEGT- 68
Query: 260 LCHPPCAPDS-RQPTCADAAPPPPPACRHRWRAGACRCPGCSCTRE*GDP*CAQPSCA 90
C PPC S PTC CR + +C P C C +P C++PSC+
Sbjct: 69 -CLPPCCVVSCTPPTCCQLHHAQASCCRPSYCGQSCCRPACCC--HCCEPSCSKPSCS 123
>ref|NP_889120.1| flagellar hook-length control protein [Bordetella bronchiseptica]
gi|33575996|emb|CAE33076.1| flagellar hook-length
control protein [Bordetella bronchiseptica]
Length = 447
Score = 39.3 bits (90), Expect = 0.027
Identities = 30/94 (31%), Positives = 39/94 (40%), Gaps = 8/94 (8%)
Frame = -2
Query: 265 AGCVIHLALLTAGSPRAPMQRLHLHRRAATGGGQ--------GRVDARDAHAHVSEAIPS 110
A + LA TA +P P+Q L + AA Q G + AHA + P+
Sbjct: 111 AATLAALAAQTAPAPALPLQALEIAAEAAAVNAQVAAATQAAGAAARQPAHAALLAGQPA 170
Query: 109 ALSPAARCAEDLPIRRPAPGLPPGASATVPPAAS 8
A PAA A P AP +PP T PA +
Sbjct: 171 A--PAAPAAAGAPPADTAPAMPPALPQTAQPAVA 202
>gb|AAD41467.1| homeotic protein HB9 [Homo sapiens]
Length = 355
Score = 39.3 bits (90), Expect = 0.027
Identities = 40/124 (32%), Positives = 42/124 (33%), Gaps = 12/124 (9%)
Frame = +1
Query: 46 GDLGLGAGWAGLQRSAQLG*AH*GSPHSRVHEHPGHRHAPALHRWRHAGGGGGAASAHVG 225
G LG G G G G H G PH H HPG R A A A GG A +G
Sbjct: 95 GFLGAGGGGGGT------GGGH-GGPHH--HAHPGARAAAAAAAAAAAAAAGGLA---LG 142
Query: 226 CRLSGAQGG*HNQQR*ALQGH------------VPTAHHQRWRQGQSQPPSFHDAEPGDP 369
GAQGG + AL GH H Q H A P DP
Sbjct: 143 LHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADP 202
Query: 370 ASNG 381
G
Sbjct: 203 IKLG 206
