KCC003475A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003475A_C01 KCC003475A_c01
ctcagcttctcaaaGCATGCACTGCTAGCTCGTGACATCTAAACGCACATAGCGAGCGAA
AAGACTGCACCGATTGCTCGGCGCACTTCTGTTGACTTGTCGCTATTTCTTTCCTTTGCT
CAAACGTGTGCTTCTATGCTCGCGTTTCTGGCTGGATGCGTCTTCAAGGCGCTGACGGGC
GGAGACTTGAGAGAGGACTTGAGCTGCATGCTCAATGCTCTGCCTGAGGCCCTCGGCGTG
CCTCGCCTGTGCAAGGCTACTGCTAGCGACATCCGCTCGCCATGCTTCCCTTGCAATGGA
CAGAAGGTCGTTCGGCGTCCACTTTGGGACCCGCGCGCCACGTTGGCTGCAGCTAGCCCC
GACCCCGTCCTCGAGGCCATGAAGGAGTCTCCCACGCCGACCGTGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003475A_C01 KCC003475A_c01
         (407 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00122118.1| COG3115: Cell division protein [Haemophilus s...    33  0.72
ref|NP_769136.1| chromosome segregation protein [Bradyrhizobium ...    33  0.94
ref|NP_729010.1| CG32244-PB [Drosophila melanogaster] gi|2465779...    33  1.2
gb|AAM51015.1| RE72629p [Drosophila melanogaster]                      33  1.2
ref|XP_225250.2| similar to ras responsive element binding prote...    32  1.6

>ref|ZP_00122118.1| COG3115: Cell division protein [Haemophilus somnus 129PT]
          Length = 335

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 27/97 (27%), Positives = 38/97 (38%), Gaps = 4/97 (4%)
 Frame = -3

Query: 405 HGRRGRLLHGLEDGVGASCSQRGARVPKWTPNDLLSIAREAWRADVASSSLAQARHA--- 235
           H     L H  E     S  Q   R+P   PN ++         D AS S+ +   +   
Sbjct: 83  HNSHQPLYHYSEQSAVQSVDQIKIRLPDSEPNYVMQERFSPKHTDYASMSIEELEKSIDL 142

Query: 234 -EGLRQSIEHAAQVLSQVSARQRLEDASSQKREHRST 127
            EG+  S +H  Q L+Q+S  Q + D      EH  T
Sbjct: 143 DEGINSSSQHLRQELAQISG-QSIADDKVNIEEHMFT 178

>ref|NP_769136.1| chromosome segregation protein [Bradyrhizobium japonicum]
           gi|27350752|dbj|BAC47761.1| chromosome segregation
           protein [Bradyrhizobium japonicum USDA 110]
          Length = 1154

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 294 AREAWRADVASSSLAQARHAEGLRQSIEHAAQVLSQVSARQRL 166
           +REAWRA     ++A+ RHA   R+   HAA+  +   A  RL
Sbjct: 675 SREAWRAAQRELNVARERHATAEREISRHAARKATLSEAHSRL 717

>ref|NP_729010.1| CG32244-PB [Drosophila melanogaster] gi|24657793|ref|NP_729011.1|
           CG32244-PC [Drosophila melanogaster]
           gi|23093017|gb|AAN11606.1| CG32244-PB [Drosophila
           melanogaster] gi|23093018|gb|AAN11607.1| CG32244-PC
           [Drosophila melanogaster]
          Length = 454

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 282 WRADVASSSLAQARHAEGLRQSIEHAAQVLSQVSARQRL 166
           WR  V  ++LA+A   EGLRQ       +L  +S++QRL
Sbjct: 92  WRERVLRNALAKALADEGLRQKFAEVLPILRMLSSQQRL 130

>gb|AAM51015.1| RE72629p [Drosophila melanogaster]
          Length = 454

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 282 WRADVASSSLAQARHAEGLRQSIEHAAQVLSQVSARQRL 166
           WR  V  ++LA+A   EGLRQ       +L  +S++QRL
Sbjct: 92  WRERVLRNALAKALADEGLRQKFAEVLPILRMLSSQQRL 130

>ref|XP_225250.2| similar to ras responsive element binding protein 1; RAS-responsive
           element binding protein-1 [Rattus norvegicus]
          Length = 1882

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +1

Query: 169 ALTGGDLREDLSCMLNALPEALGVPRLCKATASDIRS------PCFPCNGQKVVRRPLWD 330
           A+   D+++ L    +A P+ + +P L KA A+ +++      P  P        +PL  
Sbjct: 580 AIELADIQQILKMAASAPPQ-ISLPPLSKAPATPLQAIFKHMPPLKP--------KPLVA 630

Query: 331 PRATLAAASPDPVLEAMKESP 393
           PR  +AA++P P++ A + SP
Sbjct: 631 PRTVVAASTPPPLINAQQASP 651



EST assemble image


clone accession position
1 MXL042g03_r BP095497 1 407
2 MXL056h02_r BP096329 15 351




Chlamydomonas reinhardtii
Kazusa DNA Research Institute