KCC003474A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003474A_C01 KCC003474A_c01
tcaagaaggtgaaggagtacttcaaggaccccaaggcgccgctcacctacgattcactgc
gcgccatctccactgccggcGCCGGCCTGCTCAAGTGGGTGCTGGCCATGGTCAACTACA
ACAACGTGGCCCGCACCGTGGAGCCCAAGCGCAAGAAGGTGGCGGAGAGCGAGAAGAACC
TGCGCATTGCGCAGAAGGACCTGGCCTCCACCAAGCTGGAGCTGCAGTCACTCAACGACC
AGCTGGGCAAGCTGCGCACACAGTTTGAGGAGAAGACGGCGGAGCAGCAGGACCTTAAGG
CCAAGGCCGACCTCATGGAGCGCCGCCTCATCGCCGCCTCCAAGCTGATTGCAGGCCTGG
GCTCGGAGCGCGAGCGCTGGACCCGCGACATTGCCGACCTGGAGTCTCGCCGCGACCGCC
TCATTGGCGACTGCCTGCTGACCAGCTCCTTCCTGTCCTATACCGGCGCCTTCACCGCCA
CCTACCGCCACGCCATGGTGTACGAGATGTGGCAGGACGACGTCAAGGCGCGCGGCGTGC
CGGTGACGCAGCCCTTCCGCCTGGAGGCGCTGCTGACGTCAGACGTGGAGACGACTGGCT
GGGCCAGTGAGGGCCTGCCCTCCGACGAGCTGTCCATCCAGAACGGCATCCTCACTGTGC
GTGCCAACCGCTGGCCGCTGTGCATCGACCCACAGATGCAGGCCGTAAACTGGATCAAGA
GCCGCGAGGGCAAGATGCTTGAGGGCAAGGTGAAGACCTTCAACGACAGCGACTTCCTGA
AGCAGCTGGAGCTGTCCATCCAGTACGGCTTCCCGTTCCTGTTTGAGAACCTGGACGAGT
ACATTGACCCCGTCATTGACCCCGTGCTGGAGAAGAACCTGGTGCCGGGCAGCAGCGGCA
AGTTCGTGATCAAGCTGGGCGACAAGGAGGTGGAGTGGGACAGCAACTTCCGGCTGTACA
TGACGTCCAAGCTGTCCAACCCGCACTACGGCCCCGAAATCAGCGGCAAGACCATGATCA
TCAACTACGGCGTCACGCAGCAGGGCCTCACGGAGCAGCTGCTGAACGTCACGCTGCGCC
ACGAGCGCTCAGACCTGGAGGAGGCGCGTGAGGCGCTGATCAAGCAGATGAGCGAGAACA
AGGCCACGCTGCAGGCGCTGGAGGACACGCTGCTGCGCGAGCTGTCCAACGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003474A_C01 KCC003474A_c01
         (1194 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9SMH3|DY1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner...   775  0.0
dbj|BAC04579.1| unnamed protein product [Homo sapiens]                418  e-116
ref|XP_113706.3| similar to 1-alpha dynein heavy chain [Homo sap...   418  e-116
ref|XP_321432.1| ENSANGP00000022143 [Anopheles gambiae] gi|30173...   367  e-100
ref|NP_524541.2| Dynein heavy chain at 89D CG1842-PA [Drosophila...   366  e-100

>sp|Q9SMH3|DY1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner arm I1 complex (1-alpha
            DHC) (Dynein 1, subspecies f) gi|5931718|emb|CAB56598.1|
            1-alpha dynein heavy chain [Chlamydomonas reinhardtii]
          Length = 4625

 Score =  775 bits (2002), Expect = 0.0
 Identities = 395/397 (99%), Positives = 395/397 (99%)
 Frame = +3

Query: 3    KKVKEYFKDPKAPLTYDSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNL 182
            KKVKEYFKDPKAPLTYDSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNL
Sbjct: 3352 KKVKEYFKDPKAPLTYDSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNL 3411

Query: 183  RIAQKDLASTKLELQSLNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLG 362
            RIAQKDLASTKLELQSLNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLG
Sbjct: 3412 RIAQKDLASTKLELQSLNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLG 3471

Query: 363  SERERWTRDIADLESRRDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVP 542
            SERERWTRDIADLESRRDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVP
Sbjct: 3472 SERERWTRDIADLESRRDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVP 3531

Query: 543  VTQPFRLEALLTSDVETTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKS 722
            VTQPFRLEALLTSDVETTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKS
Sbjct: 3532 VTQPFRLEALLTSDVETTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKS 3591

Query: 723  REGKMLEGKVKTFNDSDFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPGSSGK 902
            REGKMLEGKVKTFNDSDFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPG  GK
Sbjct: 3592 REGKMLEGKVKTFNDSDFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPG-DGK 3650

Query: 903  FVIKLGDKEVEWDSNFRLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRH 1082
            FVIKLGDKEVEWDSNFRLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRH
Sbjct: 3651 FVIKLGDKEVEWDSNFRLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRH 3710

Query: 1083 ERSDLEEAREALIKQMSENKATLQALEDTLLRELSNA 1193
            ERSDLEEAREALIKQMSENKATLQALEDTLLRELSNA
Sbjct: 3711 ERSDLEEAREALIKQMSENKATLQALEDTLLRELSNA 3747

>dbj|BAC04579.1| unnamed protein product [Homo sapiens]
          Length = 828

 Score =  418 bits (1075), Expect = e-116
 Identities = 210/383 (54%), Positives = 287/383 (74%)
 Frame = +3

Query: 45   TYDSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNLRIAQKDLASTKLEL 224
            T + + A+S AG G+LK+V A++ Y +V R ++PKR+KVA  E+N  + +++L   + EL
Sbjct: 291  TTEEMEAVSKAGLGMLKFVEAVMGYCDVFREIKPKREKVARLERNFYLTKRELERIQNEL 350

Query: 225  QSLNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLGSERERWTRDIADLE 404
             ++  +L  L  ++E    E+Q L+ +A++MERRLIAA KLI+GLGSE  RW  D+ +L 
Sbjct: 351  AAIQKELETLGAKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENIRWLNDLDELM 410

Query: 405  SRRDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVPVTQPFRLEALLTSD 584
             RR +L+GDCLL ++FLSY GAFT  +R  MV  +WQ+D+  R +P++QPFRLE+LLT D
Sbjct: 411  HRRVKLLGDCLLCAAFLSYEGAFTWEFRDEMVNRIWQNDILEREIPLSQPFRLESLLTDD 470

Query: 585  VETTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKSREGKMLEGKVKTFN 764
            VE + W S+GLP DELS+QNGILT RA+R+PLCIDPQ QA+NWIK +E K    +V +FN
Sbjct: 471  VEISRWGSQGLPPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKN-NLRVASFN 529

Query: 765  DSDFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPGSSGKFVIKLGDKEVEWDS 944
            D DFLKQLE+SI+YG PFLF ++DEYIDPVID VLEKN+      +F+I LGDKEV++DS
Sbjct: 530  DPDFLKQLEMSIKYGTPFLFRDVDEYIDPVIDNVLEKNIKVSQGRQFII-LGDKEVDYDS 588

Query: 945  NFRLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRHERSDLEEAREALIK 1124
            NFRLY+ +KL+NP Y P + GK M+INY VT +GL +QLL+V + +ER +LEE RE LI+
Sbjct: 589  NFRLYLNTKLANPRYSPSVFGKAMVINYTVTLKGLEDQLLSVLVAYERRELEEQREHLIQ 648

Query: 1125 QMSENKATLQALEDTLLRELSNA 1193
            + SENK  L+ LED+LLREL+ +
Sbjct: 649  ETSENKNLLKDLEDSLLRELATS 671

>ref|XP_113706.3| similar to 1-alpha dynein heavy chain [Homo sapiens]
          Length = 4103

 Score =  418 bits (1075), Expect = e-116
 Identities = 210/383 (54%), Positives = 287/383 (74%)
 Frame = +3

Query: 45   TYDSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNLRIAQKDLASTKLEL 224
            T + + A+S AG G+LK+V A++ Y +V R ++PKR+KVA  E+N  + +++L   + EL
Sbjct: 3215 TTEEMEAVSKAGLGMLKFVEAVMGYCDVFREIKPKREKVARLERNFYLTKRELERIQNEL 3274

Query: 225  QSLNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLGSERERWTRDIADLE 404
             ++  +L  L  ++E    E+Q L+ +A++MERRLIAA KLI+GLGSE  RW  D+ +L 
Sbjct: 3275 AAIQKELETLGAKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENIRWLNDLDELM 3334

Query: 405  SRRDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVPVTQPFRLEALLTSD 584
             RR +L+GDCLL ++FLSY GAFT  +R  MV  +WQ+D+  R +P++QPFRLE+LLT D
Sbjct: 3335 HRRVKLLGDCLLCAAFLSYEGAFTWEFRDEMVNRIWQNDILEREIPLSQPFRLESLLTDD 3394

Query: 585  VETTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKSREGKMLEGKVKTFN 764
            VE + W S+GLP DELS+QNGILT RA+R+PLCIDPQ QA+NWIK +E K    +V +FN
Sbjct: 3395 VEISRWGSQGLPPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKN-NLRVASFN 3453

Query: 765  DSDFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPGSSGKFVIKLGDKEVEWDS 944
            D DFLKQLE+SI+YG PFLF ++DEYIDPVID VLEKN+      +F+I LGDKEV++DS
Sbjct: 3454 DPDFLKQLEMSIKYGTPFLFRDVDEYIDPVIDNVLEKNIKVSQGRQFII-LGDKEVDYDS 3512

Query: 945  NFRLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRHERSDLEEAREALIK 1124
            NFRLY+ +KL+NP Y P + GK M+INY VT +GL +QLL+V + +ER +LEE RE LI+
Sbjct: 3513 NFRLYLNTKLANPRYSPSVFGKAMVINYTVTLKGLEDQLLSVLVAYERRELEEQREHLIQ 3572

Query: 1125 QMSENKATLQALEDTLLRELSNA 1193
            + SENK  L+ LED+LLREL+ +
Sbjct: 3573 ETSENKNLLKDLEDSLLRELATS 3595

>ref|XP_321432.1| ENSANGP00000022143 [Anopheles gambiae] gi|30173723|gb|EAA01367.2|
            ENSANGP00000022143 [Anopheles gambiae str. PEST]
          Length = 3604

 Score =  367 bits (941), Expect = e-100
 Identities = 191/397 (48%), Positives = 276/397 (69%)
 Frame = +3

Query: 3    KKVKEYFKDPKAPLTYDSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNL 182
            K+V     + K     D +++IS AG GLLK+V A++ Y +V + ++PK+ +VA  E  L
Sbjct: 2507 KQVATVRANMKRSQKLDEMQSISKAGYGLLKFVRAVLGYCDVFKEIKPKKDRVAFLESEL 2566

Query: 183  RIAQKDLASTKLELQSLNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLG 362
                + L     E+  L ++L +L +++     E+Q L+   +  ERRL+AA KLI+GL 
Sbjct: 2567 NGQIRLLVRLTNEIGKLENELAELNSKYANAIKEKQMLQEMMEQAERRLLAADKLISGLS 2626

Query: 363  SERERWTRDIADLESRRDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVP 542
            SER+RW  D+  L+  R ++IG+ LL++SFL+Y G F+  +R A++++ W   V  + VP
Sbjct: 2627 SERDRWVIDLGKLQIERTKVIGNALLSASFLAYMGPFSWEFRKAILFDDWLAHVVQQAVP 2686

Query: 543  VTQPFRLEALLTSDVETTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKS 722
             T+P+R+   L+SD+E + WASEGLP DELSIQNGILT RA+R+PLCIDPQ QA++WI+ 
Sbjct: 2687 FTEPYRVNGSLSSDLEQSTWASEGLPPDELSIQNGILTTRASRFPLCIDPQQQALSWIRK 2746

Query: 723  REGKMLEGKVKTFNDSDFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPGSSGK 902
            RE      K  +FND DFLKQLE++I+YG P LF+++D+YIDPVID VLE+N V   +G+
Sbjct: 2747 REAPN-NLKTLSFNDKDFLKQLEMAIKYGTPVLFQDVDDYIDPVIDNVLERN-VRVQAGR 2804

Query: 903  FVIKLGDKEVEWDSNFRLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRH 1082
             ++ +GDKEV+ D+NFRLY+T+KL+NP++ P +  K  +INY VT  GL +QLL+V +R 
Sbjct: 2805 QIVVIGDKEVDVDANFRLYLTTKLANPNFDPAVYAKAQVINYTVTVSGLEDQLLSVVVRA 2864

Query: 1083 ERSDLEEAREALIKQMSENKATLQALEDTLLRELSNA 1193
            ER+DLEE RE LI + S NKA LQ LED+LLREL+ +
Sbjct: 2865 ERADLEEQRETLIAETSANKALLQNLEDSLLRELATS 2901

>ref|NP_524541.2| Dynein heavy chain at 89D CG1842-PA [Drosophila melanogaster]
            gi|23172501|gb|AAF56793.2| CG1842-PA [Drosophila
            melanogaster]
          Length = 5106

 Score =  366 bits (940), Expect = e-100
 Identities = 187/381 (49%), Positives = 269/381 (70%)
 Frame = +3

Query: 51   DSLRAISTAGAGLLKWVLAMVNYNNVARTVEPKRKKVAESEKNLRIAQKDLASTKLELQS 230
            + +  IS AGAGLL++V A++ + +V + V+PK++++    +   +  K L     E+Q 
Sbjct: 3855 EDMAKISVAGAGLLRFVRAVLGFFDVYKEVKPKKERLDFLVEEQEVQIKLLNHLNGEIQK 3914

Query: 231  LNDQLGKLRTQFEEKTAEQQDLKAKADLMERRLIAASKLIAGLGSERERWTRDIADLESR 410
            L ++L +L   +     + + L       ERRLIA+ KLI+GL SE  RW++++A L  +
Sbjct: 3915 LEEKLNELNENYATSMKQMRALTEMMQQAERRLIASDKLISGLTSELIRWSKEMASLGQQ 3974

Query: 411  RDRLIGDCLLTSSFLSYTGAFTATYRHAMVYEMWQDDVKARGVPVTQPFRLEALLTSDVE 590
                +G CL+++SFL+YTGAFT  +R AMV++ W +D+ + G+P+  PF+++  LT+DVE
Sbjct: 3975 LIDSVGGCLISASFLAYTGAFTWEFRKAMVFDDWLEDIASLGIPIQLPFKIDGYLTTDVE 4034

Query: 591  TTGWASEGLPSDELSIQNGILTVRANRWPLCIDPQMQAVNWIKSREGKMLEGKVKTFNDS 770
             + W++EGLP DELSIQNGILT+RA+R+PLCIDPQ+QA+ WI+ RE K    KV +F+DS
Sbjct: 4035 ISQWSNEGLPPDELSIQNGILTMRASRFPLCIDPQLQALQWIRKREFKN-NLKVLSFSDS 4093

Query: 771  DFLKQLELSIQYGFPFLFENLDEYIDPVIDPVLEKNLVPGSSGKFVIKLGDKEVEWDSNF 950
            DFLKQLE++I YG P LFE++D+YIDPVID +L+KN+      KFV+ LGDKEV+WD +F
Sbjct: 4094 DFLKQLEMAIMYGTPVLFEDVDDYIDPVIDDILQKNIRIQGGRKFVM-LGDKEVDWDPSF 4152

Query: 951  RLYMTSKLSNPHYGPEISGKTMIINYGVTQQGLTEQLLNVTLRHERSDLEEAREALIKQM 1130
            R+Y+T+K SNP + P +  K ++INY VTQ GL +QLL+V +  ER DLE  RE+LI Q 
Sbjct: 4153 RVYLTTKFSNPKFDPAVYAKALVINYTVTQTGLEDQLLSVVVGTERPDLEAQRESLIAQT 4212

Query: 1131 SENKATLQALEDTLLRELSNA 1193
            SENK  LQ LED+LLRELS +
Sbjct: 4213 SENKQLLQQLEDSLLRELSTS 4233



EST assemble image


clone accession position
1 MXL065e05_r BP096826 1 487
2 MXL045b09_r BP095647 384 769
3 MXL042d05_r BP095474 465 920
4 MXL050d01_r BP095974 710 1194




Chlamydomonas reinhardtii
Kazusa DNA Research Institute