KCC003472A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003472A_C01 KCC003472A_c01
CATGCCAGGTCATTTACATTTCAAGCGACATGTCGACGCAACTGACATCTTTCCGGGCCA
CAGCCTTCACAGGTCCTGGCCGAATTTCACAGGAGCGGTACCATGAGCAGCGCGTTTCGA
GCCGCCCGAACAAAACGCGCGGCCTCGACCATCAGCCCCGGCACCCGCGGCGGACTCTGG
ACCCTGTCTGTGACCAGTGGGCAGTAGCAATAAAGCCGGCCTTCGCTACACAGGCCCTGA
CACGGGCCCTGGCCTGTGTCTCGTCCCGCGGGCCTGCGCCGCCTTCCATTCCTCAAGCTC
GCATATTTATGCCTGCCGTGCCGTACTCGTATTGTACAAGAGCGCCTCAGCACTTCCGCG
CAACCCATACAGAACTCATTGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003472A_C01 KCC003472A_c01
         (383 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL90159.1| AT24487p [Drosophila melanogaster]                      35  0.20
ref|NP_648333.1| CG3222-PA [Drosophila melanogaster] gi|7294912|...    35  0.20
gb|AAK53451.1| putative PHA synthase [Streptomyces aureofaciens]       33  0.75
ref|NP_767913.1| mdcG [Bradyrhizobium japonicum] gi|27349524|dbj...    33  0.75
ref|NP_242250.1| BH1384~unknown conserved protein in B. subtilis...    33  0.75

>gb|AAL90159.1| AT24487p [Drosophila melanogaster]
          Length = 379

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  ISSDMSTQLTSFRATAFTGP-GRISQERYHEQRVSSRPNKTRGLDHQPRHPRRTLDPVCD 194
           I+++++T+    R+TA   P G++ +ERY  +    R      L++ PR P     PV D
Sbjct: 207 IANNLATERAQLRSTAIYAPNGQVDRERYFHKLTKKRGQPNEPLENIPRRPM----PVDD 262

Query: 195 QWAVAIKPAFATQALTRALA 254
                  PA+ T+   RA A
Sbjct: 263 -------PAWETEMCVRAYA 275

>ref|NP_648333.1| CG3222-PA [Drosophila melanogaster] gi|7294912|gb|AAF50242.1|
           CG3222-PA [Drosophila melanogaster]
          Length = 379

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  ISSDMSTQLTSFRATAFTGP-GRISQERYHEQRVSSRPNKTRGLDHQPRHPRRTLDPVCD 194
           I+++++T+    R+TA   P G++ +ERY  +    R      L++ PR P     PV D
Sbjct: 207 IANNLATERAQLRSTAIYAPNGQVDRERYFHKLTKKRGQPNEPLENIPRRPM----PVDD 262

Query: 195 QWAVAIKPAFATQALTRALA 254
                  PA+ T+   RA A
Sbjct: 263 -------PAWETEMCVRAYA 275

>gb|AAK53451.1| putative PHA synthase [Streptomyces aureofaciens]
          Length = 813

 Score = 33.5 bits (75), Expect = 0.75
 Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 267 GTRHRPGPVSGPV*-RRPALLLLPTGHRQGPESAAGAGADGRGRAFCS---GGSKRAAHG 100
           G  HR   V GPV   RPA        R  P  AAGAGADG  R   +   GG  R A G
Sbjct: 509 GLGHRDHGVGGPVPGARPA--------RGRPADAAGAGADGAARGTTAAEPGGLARGADG 560

Query: 99  TA 94
           +A
Sbjct: 561 SA 562

>ref|NP_767913.1| mdcG [Bradyrhizobium japonicum] gi|27349524|dbj|BAC46538.1| mdcG
           [Bradyrhizobium japonicum USDA 110]
          Length = 215

 Score = 33.5 bits (75), Expect = 0.75
 Identities = 22/69 (31%), Positives = 28/69 (39%), Gaps = 6/69 (8%)
 Frame = +3

Query: 159 RHPRRTLDPVCDQWAVAIKPAFATQALTRALACVSSRG------PAPPSIPQARIFMPAV 320
           RHP    +P+ D WA A +P      + R  AC  + G      P PPS  + RI     
Sbjct: 24  RHPELASEPIIDGWARADRP-----LIVRRPACSDAAGMIPLGLPLPPSHGKRRIAFALA 78

Query: 321 PYSYCTRAP 347
           P      AP
Sbjct: 79  PGDIIASAP 87

>ref|NP_242250.1| BH1384~unknown conserved protein in B. subtilis [Bacillus
           halodurans] gi|25489827|pir||H83822 hypothetical protein
           BH1384 [imported] - Bacillus halodurans (strain C-125)
           gi|10174000|dbj|BAB05103.1| BH1384~unknown conserved
           protein in B. subtilis [Bacillus halodurans]
          Length = 252

 Score = 33.5 bits (75), Expect = 0.75
 Identities = 26/72 (36%), Positives = 31/72 (42%)
 Frame = -3

Query: 249 GPVSGPV*RRPALLLLPTGHRQGPESAAGAGADGRGRAFCSGGSKRAAHGTAPVKFGQDL 70
           GP SGP    P   + P     GP+   G       +AF SGG    A G AP   G  L
Sbjct: 6   GPPSGP----PMPPVPPHQPFAGPQMFGGGAMGAGPQAFSSGGINPMAGGAAPRGLGGLL 61

Query: 69  *RLWPGKMSVAS 34
            RL+ G  S A+
Sbjct: 62  SRLFGGGRSAAA 73



EST assemble image


clone accession position
1 MXL041f06_r BP095428 1 374
2 MXL042e12_r BP095483 1 383




Chlamydomonas reinhardtii
Kazusa DNA Research Institute