KCC003470A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003470A_C01 KCC003470A_c01
tccacctcttcagtcttttctagtcagaagaaaccatgcaggtcgcggctggctcggacg
gcattcagaagctgcttgcaGCGGAGGCTGAGGCCCAGCGCATTGTCGGCGACGCTCGCA
AGGCTAAGGCCGACCGCCTGCGCCAGGCTAAGGCTGAGGCCGAGAAAGAGATTGGTGCTT
ACCGGGCTGAGCGCGAGGGCGCCTACCAGAAGAAGATTGCCGAGGGATCCACCGGCTCGC
AAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCCTGGCTGTGCAGAAGATCCAGGCCG
ATGTGAAGGCCAAGAAGGGCGAGGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCA
AGTTCTAAGCGGCCGAACTAGCGAGCTGGCGGAGTTCGGACAGCGAAGCTGCATGCGCTG
GAGCATCGGCAGCGCACTGAGCAACTGCCACACCGTTGCGTGCGCGGTTTGGTTGGGGTT
TCTGTACAGTGAAGGGGGCGTGTACTGCCCCCTCTCTGTCATGAGAGTACTTTCGACGGT
ACACATGACTTCGATACACTTTTGACGCTTGACCACGGAGAGTGGGGTGTGATATCGACG
TTCGGACGTGCGCTAGCCGTATTGGCTAAACTGAGAGGGGAAAGGAGGACATATAGGCGG
GTAGATGGCTGGCATGGTTTGGAGGGGTGAACTCGCCCTGGTGTTTGccacgtatggctc
atgcaaggggcggaagtcgaccagggcaactttcgctccctttcaaatgtaaacgatatc
catagct


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003470A_C01 KCC003470A_c01
         (787 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD41861.1| OSJNBa0041A02.8 [Oryza sativa (japonica cultivar...    92  9e-18
sp|O82702|VAG1_TOBAC Vacuolar ATP synthase subunit G 1 (V-ATPase...    89  1e-16
emb|CAD27444.1| vacuolar ATPase subunit G [Mesembryanthemum crys...    88  2e-16
ref|NP_186788.1| vacuolar membrane ATPase subunit G (AVMA10) [Ar...    87  3e-16
sp|Q9SP55|VATG_CITLI Vacuolar ATP synthase subunit G (V-ATPase G...    87  4e-16

>emb|CAD41861.1| OSJNBa0041A02.8 [Oryza sativa (japonica cultivar-group)]
           gi|32492207|emb|CAE03475.1| OSJNBa0083N12.22 [Oryza
           sativa (japonica cultivar-group)]
          Length = 110

 Score = 92.0 bits (227), Expect = 9e-18
 Identities = 50/101 (49%), Positives = 68/101 (66%)
 Frame = +3

Query: 60  GIQKLLAAEAEAQRIVGDARKAKADRLRQAKAEAEKEIGAYRAEREGAYQKKIAEGSTGS 239
           GIQ+LLAAE EAQ+IV  AR AK+ RLRQAK EAE+EI  YRA+ E  +Q+K+AE S  S
Sbjct: 9   GIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESSGDS 68

Query: 240 QATFQRLQSETGLAVQKIQADVKAKKGEVLDMLMGYVGGVK 362
            A  +RL+ ET   + +++    +   EV+ ML+ +V  VK
Sbjct: 69  GANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109

>sp|O82702|VAG1_TOBAC Vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1) (Vacuolar
           proton pump G subunit 1) gi|3717987|emb|CAA06756.1| G
           subunit of Vacuolar-type H+-ATPase [Nicotiana tabacum]
          Length = 110

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 48/109 (44%), Positives = 70/109 (64%)
 Frame = +3

Query: 36  MQVAAGSDGIQKLLAAEAEAQRIVGDARKAKADRLRQAKAEAEKEIGAYRAEREGAYQKK 215
           M  ++G +GIQ LLAAE EAQ IV +AR AK  RL+QAK EAEKEI  +RA  E  +Q+K
Sbjct: 1   MASSSGQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRK 60

Query: 216 IAEGSTGSQATFQRLQSETGLAVQKIQADVKAKKGEVLDMLMGYVGGVK 362
           + + S  S A  +RL+ ET   ++ ++ + +    +V+ ML+ +V  VK
Sbjct: 61  LEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVK 109

>emb|CAD27444.1| vacuolar ATPase subunit G [Mesembryanthemum crystallinum]
          Length = 109

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 45/105 (42%), Positives = 67/105 (62%)
 Frame = +3

Query: 36  MQVAAGSDGIQKLLAAEAEAQRIVGDARKAKADRLRQAKAEAEKEIGAYRAEREGAYQKK 215
           M+ +   +GIQ LLAAE EAQ I+  A+ AK  RLRQAK EAEKEI  +RA+ E  +Q++
Sbjct: 1   MEASRAQNGIQLLLAAEQEAQHIINAAKNAKTARLRQAKEEAEKEIAEFRAQMEADHQRR 60

Query: 216 IAEGSTGSQATFQRLQSETGLAVQKIQADVKAKKGEVLDMLMGYV 350
           +AE +  S A  +RL+ ET   +++++         V++ML+ YV
Sbjct: 61  LAESTGDSGANVKRLEQETNAKIEQLKIQASTISPYVVEMLLRYV 105

>ref|NP_186788.1| vacuolar membrane ATPase subunit G (AVMA10) [Arabidopsis thaliana]
           gi|30678328|ref|NP_850489.1| vacuolar membrane ATPase
           subunit G (AVMA10) [Arabidopsis thaliana]
           gi|12585427|sp|O82628|VAG1_ARATH Vacuolar ATP synthase
           subunit G 1 (V-ATPase G subunit 1) (Vacuolar proton pump
           G subunit 1) gi|11279178|pir||T51825 H+-exporting ATPase
           (EC 3.6.3.6) chain G, vacuolar [imported] - Arabidopsis
           thaliana gi|3717946|emb|CAA06758.1| vag1 [Arabidopsis
           thaliana] gi|5853315|gb|AAD54418.1| vacuolar membrane
           ATPase subunit G [Arabidopsis thaliana]
           gi|6692259|gb|AAF24609.1|AC010870_2 vacuolar membrane
           ATPase subunit G (AVMA10) [Arabidopsis thaliana]
           gi|18252861|gb|AAL62357.1| vacuolar membrane ATPase
           subunit G (AVMA10) [Arabidopsis thaliana]
           gi|21389701|gb|AAM48049.1| vacuolar membrane ATPase
           subunit G AVMA10 [Arabidopsis thaliana]
          Length = 110

 Score = 87.0 bits (214), Expect = 3e-16
 Identities = 48/109 (44%), Positives = 69/109 (63%)
 Frame = +3

Query: 36  MQVAAGSDGIQKLLAAEAEAQRIVGDARKAKADRLRQAKAEAEKEIGAYRAEREGAYQKK 215
           M+   G   IQ+LLAAE EAQ IV  AR AK  RL+QAK EAEKEI  Y+A+ E  +Q+K
Sbjct: 1   MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query: 216 IAEGSTGSQATFQRLQSETGLAVQKIQADVKAKKGEVLDMLMGYVGGVK 362
           + E S  S A  +RL+ ET   +++++ +      +V++ML+ +V  VK
Sbjct: 61  LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVK 109

>sp|Q9SP55|VATG_CITLI Vacuolar ATP synthase subunit G (V-ATPase G subunit) (Vacuolar
           proton pump G subunit) gi|5917785|gb|AAD56039.1|
           vacuolar membrane ATPase subunit G [Citrus limon]
          Length = 110

 Score = 86.7 bits (213), Expect = 4e-16
 Identities = 48/104 (46%), Positives = 67/104 (64%)
 Frame = +3

Query: 51  GSDGIQKLLAAEAEAQRIVGDARKAKADRLRQAKAEAEKEIGAYRAEREGAYQKKIAEGS 230
           G  GIQ+LLAAE EAQ IV  AR AK  RL+QAK EAE+EI  YRA+ E  +Q+K+AE  
Sbjct: 6   GQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRKLAESV 65

Query: 231 TGSQATFQRLQSETGLAVQKIQADVKAKKGEVLDMLMGYVGGVK 362
             S A  +RL+ ET + +  ++A  +  + +V+ M + +V  VK
Sbjct: 66  GDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVK 109



EST assemble image


clone accession position
1 MXL100d01_r BP098860 1 367
2 MXL068d03_r BP096993 192 615
3 MXL040e06_r BP095357 443 787




Chlamydomonas reinhardtii
Kazusa DNA Research Institute