KCC003467A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003467A_C01 KCC003467A_c01
CCACATACTCCTTAATCGCATATAGTCCTTGTAGGGACTATAACTGCCATCTCAGGCCGC
GGTTCGCTCGTAGCGCACACATCTGACAAGATTTGAGCAGCAGCCACGGCGAGGCCGTCC
ACGCAACAATGGGGTTCGGCTGGCAAGGGTCCGTGTCCATCGCCTTTACGGCGCTGGCAT
TCGTCGTGATGGCCGCAGATTGGGTTGGTCCTGACGTCACATTTACGGTCCTCCTGGCCT
TCTTGACTGCCTTCGATGGGCAAATCGTCACGGTTGCCAAAGCCGCGGCGGGCTACGGCA
ACACGGGCCTCCTTACCGTCATCTTTCTGTACTGGGTGGCTGAGGGCATCACGCAGACCG
GAGGCCTGGAGCTCATTATGAACTTTGTGCTGGGTCGCTCGCGGTCCGTACACTGGGCGC
TTGCTCGGTCGATGTTCCCCGTCATGTGCCTGTCCGCGTTCCTGAACAACACCCCGTGCG
TCACCTTCATGATTCCAATTCTCATCTCATGGGGCCGCCGCTGCGGTGTGCCAATCAAGA
AGCTGCTCATCCCGCTGTCGTACGCGTCCGTGCTGGGCGGCACCTGCACGTCCATCGGTA
CCTCCACCAACCTGGTCATCGTCGGTCTGCAGGACGCGCGTTATA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003467A_C01 KCC003467A_c01
         (645 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_244250.1| sodium/sulfate symporter [Bacillus halodurans] ...   115  5e-25
ref|NP_865825.1| sodium/sulfate symporter [Pirellula sp.] gi|324...   111  1e-23
ref|NP_692581.1| sulfur deprivation response regulator [Oceanoba...   105  6e-22
ref|NP_809325.1| putative Na+/sulfate symporter [Bacteroides the...   104  1e-21
ref|NP_785011.1| sodium/sulfate symport protein (putative) [Lact...   100  2e-20

>ref|NP_244250.1| sodium/sulfate symporter [Bacillus halodurans]
           gi|25494728|pir||H84072 sodium/sulfate symporter BH3384
           [imported] - Bacillus halodurans (strain C-125)
           gi|10176007|dbj|BAB07103.1| sodium/sulfate symporter
           [Bacillus halodurans]
          Length = 589

 Score =  115 bits (288), Expect = 5e-25
 Identities = 63/150 (42%), Positives = 92/150 (61%)
 Frame = +3

Query: 180 FVVMAADWVGPDVTFTVLLAFLTAFDGQIVTVAKAAAGYGNTGLLTVIFLYWVAEGITQT 359
           FV +  +W  P++T    L+ L  F+  ++T  +A  G+ NTG+ TV  L+ +A  ++++
Sbjct: 17  FVALIREWFVPELTVFFALSSLVLFN--VLTPGEALNGFANTGVHTVALLFVIAAAVSKS 74

Query: 360 GGLELIMNFVLGRSRSVHWALARSMFPVMCLSAFLNNTPCVTFMIPILISWGRRCGVPIK 539
             L  +M  VL ++ ++   L R M P+  LSAF+NNTP VT +IP +  W     +   
Sbjct: 75  DVLHQLMKRVLHQTTNLSTILCRLMIPISSLSAFMNNTPIVTMLIPTVQQWAISNKIKPS 134

Query: 540 KLLIPLSYASVLGGTCTSIGTSTNLVIVGL 629
           KLLIPLSYA++LGGT T IGTS NLVI GL
Sbjct: 135 KLLIPLSYAAILGGTITLIGTSGNLVIHGL 164

>ref|NP_865825.1| sodium/sulfate symporter [Pirellula sp.]
           gi|32444068|emb|CAD73510.1| sodium/sulfate symporter
           [Pirellula sp.]
          Length = 612

 Score =  111 bits (277), Expect = 1e-23
 Identities = 62/154 (40%), Positives = 91/154 (58%)
 Frame = +3

Query: 159 IAFTALAFVVMAADWVGPDVTFTVLLAFLTAFDGQIVTVAKAAAGYGNTGLLTVIFLYWV 338
           +A TAL  +V+  D  G     T LL   T          +A AG+GN GL+T+  L+ V
Sbjct: 36  LALTALTVLVVVQDLTG-----TPLLPNPT----------QAVAGFGNKGLITIALLFAV 80

Query: 339 AEGITQTGGLELIMNFVLGRSRSVHWALARSMFPVMCLSAFLNNTPCVTFMIPILISWGR 518
             G+  TGG EL   ++L +++++     R + PV  LS FLNNTP V  M+P++   G+
Sbjct: 81  VAGLELTGGTELATGWLLSKAKNLRDTQVRMLLPVAFLSGFLNNTPVVAAMLPVVGDLGK 140

Query: 519 RCGVPIKKLLIPLSYASVLGGTCTSIGTSTNLVI 620
           R  +   +LL+PLSYA++LGG CT +GTSTNL++
Sbjct: 141 RLTISPSRLLLPLSYAAILGGMCTLMGTSTNLLV 174

>ref|NP_692581.1| sulfur deprivation response regulator [Oceanobacillus iheyensis
           HTE831] gi|22777343|dbj|BAC13616.1| sulfur deprivation
           response regulator [Oceanobacillus iheyensis HTE831]
          Length = 588

 Score =  105 bits (262), Expect = 6e-22
 Identities = 60/138 (43%), Positives = 83/138 (59%)
 Frame = +3

Query: 216 VTFTVLLAFLTAFDGQIVTVAKAAAGYGNTGLLTVIFLYWVAEGITQTGGLELIMNFVLG 395
           V FTVL  FL      I+  ++A +G+ N G++TV  L+ VA  + ++G LE IM   + 
Sbjct: 25  VVFTVLTVFLIT---GILNPSEALSGFSNEGMITVGLLFVVAGAVKKSGILEDIMKSWMA 81

Query: 396 RSRSVHWALARSMFPVMCLSAFLNNTPCVTFMIPILISWGRRCGVPIKKLLIPLSYASVL 575
            S  +  ++AR   PV  LS FLNNTP V   +PI+  W    G+   K LIPLSY ++L
Sbjct: 82  GSHRMIDSVARFFIPVSLLSGFLNNTPIVVTFMPIVKGWCEERGIAPSKFLIPLSYVTIL 141

Query: 576 GGTCTSIGTSTNLVIVGL 629
           GGT T +GTSTNLV+ G+
Sbjct: 142 GGTITVLGTSTNLVVHGM 159

>ref|NP_809325.1| putative Na+/sulfate symporter [Bacteroides thetaiotaomicron
           VPI-5482] gi|29337715|gb|AAO75519.1| putative
           Na+/sulfate symporter [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 517

 Score =  104 bits (260), Expect = 1e-21
 Identities = 62/149 (41%), Positives = 90/149 (59%), Gaps = 2/149 (1%)
 Frame = +3

Query: 189 MAADWVGPD-VTFTVLLAFLTAFDGQIVTVAKAAAGYGNTGLLTVIFLYWVAEGITQTGG 365
           + AD + P  V F+V++ FL      I+T  +   G+ N G++TV  L+ V+EGI Q+G 
Sbjct: 19  LIADKMRPGMVLFSVVVLFLCV---GILTPKEMLEGFSNKGMITVALLFLVSEGIRQSGT 75

Query: 366 LELIMNFVLGRSRS-VHWALARSMFPVMCLSAFLNNTPCVTFMIPILISWGRRCGVPIKK 542
           L  ++  +L + ++ V  A  R +  V  +SAFLNNTP V    PI+  W +   +P  K
Sbjct: 76  LGQVIKKLLPQGKTTVFKAQLRILPSVAFISAFLNNTPVVVIFAPIIKHWAKSVKLPATK 135

Query: 543 LLIPLSYASVLGGTCTSIGTSTNLVIVGL 629
            LIPLSY ++LGG CT IGTSTNLV+ G+
Sbjct: 136 FLIPLSYVTILGGICTLIGTSTNLVVHGM 164

>ref|NP_785011.1| sodium/sulfate symport protein (putative) [Lactobacillus plantarum
           WCFS1] gi|28270954|emb|CAD63858.1| sodium/sulfate
           symport protein (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 591

 Score =  100 bits (249), Expect = 2e-20
 Identities = 57/152 (37%), Positives = 90/152 (58%)
 Frame = +3

Query: 174 LAFVVMAADWVGPDVTFTVLLAFLTAFDGQIVTVAKAAAGYGNTGLLTVIFLYWVAEGIT 353
           ++F++MA +   P+      LAFL  F G I++   A +G+ N GL T+  +Y +A  I 
Sbjct: 14  VSFILMAMEVTTPNAVILCALAFLM-FVG-ILSPTDALSGFANDGLATIALMYIIAYAIA 71

Query: 354 QTGGLELIMNFVLGRSRSVHWALARSMFPVMCLSAFLNNTPCVTFMIPILISWGRRCGVP 533
           ++  +  + + +LG   S   +L R +  V  +S F+NNTP V+ + P++  W ++ G+ 
Sbjct: 72  KSNIIIRLFDRILGDGHSEKRSLLRLLASVSVISPFMNNTPIVSTLTPMVQRWTKQKGMA 131

Query: 534 IKKLLIPLSYASVLGGTCTSIGTSTNLVIVGL 629
           I K LIPLSYA++L G  T +GTSTNLV  GL
Sbjct: 132 ISKFLIPLSYATILSGLLTVLGTSTNLVAQGL 163



EST assemble image


clone accession position
1 MXL045a04_r BP095636 1 383
2 MXL038b10_r BP095215 1 483
3 MXL082b03_r BP097837 8 400
4 MXL097c08_r BP098678 294 645




Chlamydomonas reinhardtii
Kazusa DNA Research Institute