KCC003466A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003466A_C01 KCC003466A_c01
ggctgacgtggccatgcgcagcaccatccccgtcggctgggccccggcggactacgCCAC
GCCCGACGCGCACATCCTTACCGTCACCTTCAACCCCGCCGGCCCCAGCGTGACGCTGTC
GGGCTTCCCGGGCAACTCCGCCAAGGTCATCAAGGCGGACGTGCTGGTGGGCACGAGGCA
GGAGCTGGTCGTCCACGTCGTCGACGGCGTGCTGATCACGACCCAGACCGCCAGGGCGCT
GGGTCTGATCCAAGCCAACGGCACCACCGCGCCCGTGCCCACGCCCGCGCCCACGCCCGC
GCCCTCGCCGTCGTCTTCCGGTACCGGCACGGTGCCGGTCTCGACGGTCCCCAACCTGGG
CGCTGCGATCGCCACCACCCCCGACCTGAGCCAGCTGCTGAGCAAGGCTCTTGCCGCGGG
TCTGGGCAACCAGGTGGCGACCGCGAACAGTCCCCTCACCATGTTTGCGCCCAACAATGC
CGCCTGGGCGGCGTTTGAGAGCATGCTTAATGCCAAGGACCCGCGCCTGACGGCCGTAGC
CAACCAGATCATCGCGCTGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003466A_C01 KCC003466A_c01
         (561 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|...    60  2e-08
pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardt...    58  8e-08
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         58  1e-07
ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|2838049...    57  2e-07
gb|AAK77552.1|AF394230_1 LCI5 [Chlamydomonas reinhardtii]              57  2e-07

>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
           gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
           sapiens]
          Length = 580

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 58/172 (33%), Positives = 72/172 (41%), Gaps = 5/172 (2%)
 Frame = +3

Query: 9   WPCAAPSPSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRA----TPPRSSRRTCWWAR 176
           WP  A SP+  P R +PR +  + P+  TPP  +   R  RA    TPPR S RT   A 
Sbjct: 188 WPPRA-SPTRTPPRESPRMSHRASPT-RTPPRASPTRRPPRASPTRTPPRESLRTSHRAS 245

Query: 177 G-RSWSSTSSTAC*SRPRPPGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARCRSRRSP 353
             R     S T    R  P G    + P  PPR  PR  PR  P      P+R    R+P
Sbjct: 246 PTRMPPRASPTRRPPRASPTGSPPRASPMTPPRASPRTPPRASP---TTTPSRASLTRTP 302

Query: 354 TWALRSPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACL 509
           +WA  SP      +   ++   V  TR  PR  P+       P G   RA L
Sbjct: 303 SWA--SPTTTPSRASLMKMESTVSITRTPPRASPTGTPSRASPTGTPSRASL 352

 Score = 31.6 bits (70), Expect = 7.7
 Identities = 55/192 (28%), Positives = 71/192 (36%), Gaps = 16/192 (8%)
 Frame = +3

Query: 27  SPS-AGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSWSSTSS 203
           SPS A   RT PR +    PS ++      R   +R     S + T + A      ST+ 
Sbjct: 1   SPSRASLTRTPPRASLMRRPSTASLTRTPSRASPTRMPSRASLKMTPFRASLTKMESTAL 60

Query: 204 TAC*SRP------------RPPGRWV*SKPTA-PPRPCPRPRPRPRPRRRLP--VPARCR 338
                R             R P R   + PT  PPR  PR   R  P RRLP   P    
Sbjct: 61  LRTLPRASLMRTPTRASLMRTPPR---ASPTRKPPRASPRTPSRASPTRRLPRASPMGSP 117

Query: 339 SRRSPTWALRSPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACLMPR 518
            R SP   +R+PP  +     +   P    +   P   P P   PT  P R   A   P 
Sbjct: 118 HRASP---MRTPPRASPTGTPSTASPTGTPSSASPTGTP-PRASPTGTPPRAW-ATRSPS 172

Query: 519 TRA*RP*PTRSS 554
           T +    P+R+S
Sbjct: 173 TASLTRTPSRAS 184

>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii
           gi|530876|gb|AAB53953.1| amino acid feature: Rod protein
           domain, aa 266 .. 468; amino acid feature: globular
           protein domain, aa 32 .. 265
          Length = 473

 Score = 58.2 bits (139), Expect = 8e-08
 Identities = 49/159 (30%), Positives = 70/159 (43%), Gaps = 1/159 (0%)
 Frame = +3

Query: 12  PCAAPSPSAGPRRT-TPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSW 188
           P A+PSPS  P+ + +P P+  + PSPS  P+P+   +AS +  P  S +    A   S 
Sbjct: 293 PKASPSPSPSPKASPSPSPSPKASPSPSPSPSPSPSPKASPSPSPSPSVQP---ASKPSP 349

Query: 189 SSTSSTAC*SRPRPPGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARCRSRRSPTWALR 368
           S + S +   RP PP       P+  P P P P P+P P    P P+   S +       
Sbjct: 350 SPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSPKPSPS---PSPSPSPSPKPSPSPSP 406

Query: 369 SPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPP 485
           SP P           P    +   P+  PSP  +P+ PP
Sbjct: 407 SPSPSPSPKVSPSPSPSPSPSP-SPKASPSPAKKPSPPP 444

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 2/164 (1%)
 Frame = +3

Query: 12  PCAAPSPSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSWS 191
           P A+PSP   P   +P P  +  PSP   P+P+   +AS +  P         +   S S
Sbjct: 271 PKASPSPKVSP---SPSPKASPSPSPKASPSPSPSPKASPSPSPSPKASP---SPSPSPS 324

Query: 192 STSSTAC*SRPRP-PGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARCRS-RRSPTWAL 365
            + S      P P P     SKP+  P P P P PRP P    P P+   S   SP+ + 
Sbjct: 325 PSPSPKASPSPSPSPSVQPASKPSPSPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSP 384

Query: 366 RSPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRL 497
           +  P P+ +   +            P+  PSP   P+  P  ++
Sbjct: 385 KPSPSPSPSPSPS------------PKPSPSPSPSPSPSPSPKV 416

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = +3

Query: 12  PCAAPSPSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSWS 191
           P  +PSPS  PR + P P+ +  PSPS  P+P+   + S +  P  S            S
Sbjct: 349 PSPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSPKPSPSPSPSPSP-----------S 397

Query: 192 STSSTAC*SRPRP-PGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARCRSRRSPTWALR 368
              S +    P P P   V   P+  P P P P+  P P ++   P        P   + 
Sbjct: 398 PKPSPSPSPSPSPSPSPKVSPSPSPSPSPSPSPKASPSPAKKPSPPPPVEEGAPP--PIE 455

Query: 369 SPPP 380
            PPP
Sbjct: 456 GPPP 459

 Score = 32.7 bits (73), Expect = 3.4
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 269 APVPTPAPTPAPSPSSSGTGTVPVSTVPNLGAAIATTPDLS 391
           +P P+P P+P+PSPS S + +  VS  P+   + + +P  S
Sbjct: 393 SPSPSPKPSPSPSPSPSPSPSPKVSPSPSPSPSPSPSPKAS 433

 Score = 31.2 bits (69), Expect = 10.0
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 269 APVPTPAPTPAPSPSSSGTGTVPVSTVPNLGAAIATTPDLS 391
           +P P+P+P P+PSPS S + +   S  P+   + + +P +S
Sbjct: 377 SPSPSPSPKPSPSPSPSPSPSPKPSPSPSPSPSPSPSPKVS 417

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 66/197 (33%), Positives = 76/197 (38%), Gaps = 15/197 (7%)
 Frame = +3

Query: 6   TWPCAAPS---PSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWAR 176
           T P A+P+   P A P RT PR +    P  ++P     R    RA P  S RRT   A 
Sbjct: 30  TPPTASPARTPPRASPARTPPRASPGRTPPRASPRRTPPRASPRRAPPRASPRRTPPTAS 89

Query: 177 GRSWSSTSSTA----C*SRPRPPGRWV*SKPTAPPRPCP-RPRPRPRPRRRLPVPARCRS 341
                 T S A      S  R P R   S    PPR  P R  PR  PRR    P R   
Sbjct: 90  PTRTPPTESPARTPPTASPARTPSRA--SPRRTPPRASPTRTPPRASPRR---TPPRASP 144

Query: 342 RRSPTWALRSPPPPT*ASC*ARLLPRVWATRWRPRTVP-------SPCLRPTMPPGRRLR 500
           RR+P  A  +  PP   +   R  PR   TR  PR  P       SP   P      R  
Sbjct: 145 RRTPPRASPTRAPP--RASPKRTPPRASPTRTPPRASPTRTPPTESPARTPPTASPARTP 202

Query: 501 ACLMPRTRA*RP*PTRS 551
           +   PR    R  PTR+
Sbjct: 203 SRASPRRMPPRASPTRT 219

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 62/169 (36%), Positives = 70/169 (40%), Gaps = 12/169 (7%)
 Frame = +3

Query: 6   TWPCAAPS--PS-AGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWAR 176
           T P A+P+  PS A PRRT PR + T  P  ++P          R TPPR+S R      
Sbjct: 102 TPPTASPARTPSRASPRRTPPRASPTRTPPRASP----------RRTPPRASPR------ 145

Query: 177 GRSWSSTSSTAC*SRPRPPGRWV*SKPT-APPRPCP-RPRPRPRPRRRLPV--PARCRSR 344
            R+    S T    R  P      + PT  PPR  P R  P   P R  P   PAR  SR
Sbjct: 146 -RTPPRASPTRAPPRASPKRTPPRASPTRTPPRASPTRTPPTESPARTPPTASPARTPSR 204

Query: 345 RSPTWALRSPP--PPT*ASC*ARLLPRVWATRWRPRTVPS---PCLRPT 476
            SP    R PP   PT      R  PR   TR  PR  P    P   PT
Sbjct: 205 ASPR---RMPPRASPT------RTPPRASPTRTPPRASPKRTPPTASPT 244

>ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|28380492|gb|AAF49349.4|
           CG13731-PA [Drosophila melanogaster]
          Length = 926

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 65/196 (33%), Positives = 70/196 (35%), Gaps = 17/196 (8%)
 Frame = +3

Query: 12  PCAAPSPSAGPR---RTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGR 182
           P   P P    R   RTTPRPT      P+ PP        +   PP + R T       
Sbjct: 484 PTNKPLPPVTVRTTVRTTPRPTLPPTKPPTRPP--------TTYLPPPTVRTT------- 528

Query: 183 SWSSTSSTAC*SRPRPPGRWV*SKPTAPPRPCPR---PRPRPRPRRRLPVPARCRSRRSP 353
                       RP PP       PT PP   P    P    R  R  P P R  +R   
Sbjct: 529 ------------RPPPP-------PTRPPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPT 569

Query: 354 TWALRSPPPPT*ASC*A--------RLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACL 509
               R PPPPT AS  A        + LP V   R   RT P P L PT PP R     L
Sbjct: 570 PPPTRPPPPPTRASTPAPTYLPPTNKPLPPV-TVRTTVRTTPRPTLPPTKPPTRPPTTYL 628

Query: 510 MP---RTRA*RP*PTR 548
            P   RT    P PTR
Sbjct: 629 PPPSVRTTRPPPPPTR 644

 Score = 55.1 bits (131), Expect = 6e-07
 Identities = 62/199 (31%), Positives = 77/199 (38%), Gaps = 20/199 (10%)
 Frame = +3

Query: 12  PCAAPSPSAGPRRTTPRPTR-TSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSW 188
           P   P P    RR TP PTR    P+ ++ PAP      ++  PP + R T      R+ 
Sbjct: 344 PTNKPPPPVTTRRPTPPPTRPPPPPTRASTPAPTYLPPTNKPLPPVTVRTTV-----RTT 398

Query: 189 SSTSSTAC*SRPRPPGRWV*S---KPTAPPRPCPRPRPRP----------RPRRRLPVPA 329
              +        RPP  ++     + T PP P  RP  +P          R  R  P P 
Sbjct: 399 PRPTPPPTKPPTRPPTTYLPPPTVRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATPPPT 458

Query: 330 RCRSR---RSPTWALRSPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLR 500
           R  +R     PT    + P PT      + LP V   R   RT P P L PT PP R   
Sbjct: 459 RPPTRPPTYPPTTRRLTTPAPTYLPPTNKPLPPV-TVRTTVRTTPRPTLPPTKPPTRPPT 517

Query: 501 ACLMP---RTRA*RP*PTR 548
             L P   RT    P PTR
Sbjct: 518 TYLPPPTVRTTRPPPPPTR 536

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 60/179 (33%), Positives = 71/179 (39%), Gaps = 4/179 (2%)
 Frame = +3

Query: 24  PSPSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSWSSTSS 203
           P P   PR  TP PTR     P+T P        ++  PP ++R        R+   T  
Sbjct: 271 PPPPPSPR--TPPPTRPPTRPPTTRPPATYLPPTNKPLPPVTTRLPPPPPPPRTPPPTRP 328

Query: 204 TAC*SRPRPPGRWV*SKPT-APPRPCPRPRPRPRPRRRLPVPARCRSRRSPTWALRSPPP 380
                  RPP  ++   PT  PP P    RP P P R  P P R  S  +PT+      P
Sbjct: 329 PTKPPTTRPPATYL--PPTNKPPPPVTTRRPTPPPTRPPPPPTRA-STPAPTYL-----P 380

Query: 381 PT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACLMP---RTRA*RP*PTR 548
           PT      + LP V   R   RT P P   PT PP R     L P   RT    P PTR
Sbjct: 381 PT-----NKPLPPV-TVRTTVRTTPRPTPPPTKPPTRPPTTYLPPPTVRTTRPPPPPTR 433

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 63/202 (31%), Positives = 77/202 (37%), Gaps = 23/202 (11%)
 Frame = +3

Query: 12   PCAAPSPSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRAT--PPRSSRRTCWWARGRS 185
            P    +  A P  T P PTR   P P+ PP P  R      T  PP +        R   
Sbjct: 548  PVTVRTTRATPPPTRP-PTRPPTPPPTRPPPPPTRASTPAPTYLPPTNKPLPPVTVRTTV 606

Query: 186  WSSTSSTAC*SRP--RPPGRWV*S---KPTAPPRPCPRPRPRP----------RPRRRLP 320
             ++   T   ++P  RPP  ++     + T PP P  RP  +P          R  R  P
Sbjct: 607  RTTPRPTLPPTKPPTRPPTTYLPPPSVRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATP 666

Query: 321  VPARCRSRRS---PTWALRSPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGR 491
             P R  +R     PT    + P PT      + LP V   R   RT P P L PT PP R
Sbjct: 667  PPTRPPTRPPTYPPTTRRLTTPAPTYLPPTNKPLPPV-TVRTTVRTTPRPTLPPTKPPTR 725

Query: 492  RLRACLMP---RTRA*RP*PTR 548
                 L P   RT    P PTR
Sbjct: 726  PPTTYLPPPTVRTTRPPPPPTR 747

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 61/188 (32%), Positives = 70/188 (36%), Gaps = 9/188 (4%)
 Frame = +3

Query: 12   PCAAPSPSAGPR---RTTPRPTRTSLPSPSTPPA---PA*RCRASRATPPRSSRRTCWWA 173
            P   P P    R   RTTPRPT      P+ PP    P    R +R  PP +   T    
Sbjct: 695  PTNKPLPPVTVRTTVRTTPRPTLPPTKPPTRPPTTYLPPPTVRTTRPPPPPTRPPT---- 750

Query: 174  RGRSWSSTSSTAC*SRPRPPGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARCRSRRSP 353
            +  +      T   +R  PP          P RP  RP   P   RRL  PA       P
Sbjct: 751  KPPTTYLPPVTVRTTRATPP----------PTRPPTRPPTYPPTTRRLTTPA-------P 793

Query: 354  TWALRSPPPPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACLMP---RTR 524
            T+      PPT      + LP V   R   RT P P L PT PP +     L P   RT 
Sbjct: 794  TYL-----PPT-----NKPLPPV-TVRTTVRTTPRPTLPPTRPPTKPPTTYLPPPTVRTT 842

Query: 525  A*RP*PTR 548
               P PTR
Sbjct: 843  RPPPPPTR 850

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 57/196 (29%), Positives = 69/196 (35%), Gaps = 14/196 (7%)
 Frame = +3

Query: 12   PCAAPSPSAGPR---RTTPRPTRTSLPSPSTPPA---PA*RCRASRATPPRSSRRTCWWA 173
            P   P P    R   RTTPRPT      P+ PP    P    R +R  PP +   T    
Sbjct: 592  PTNKPLPPVTVRTTVRTTPRPTLPPTKPPTRPPTTYLPPPSVRTTRPPPPPTRPPT---- 647

Query: 174  RGRSWSSTSSTAC*SRPRPPGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARCRSRRSP 353
            +  +      T   +R  PP          P RP  RP   P   RRL  PA       P
Sbjct: 648  KPPTTYLPPVTVRTTRATPP----------PTRPPTRPPTYPPTTRRLTTPA-------P 690

Query: 354  TWA--LRSPPPPT*ASC*ARLLPRVWATRWRPRT------VPSPCLRPTMPPGRRLRACL 509
            T+      P PP       R  PR      +P T      +P P +R T PP    R   
Sbjct: 691  TYLPPTNKPLPPVTVRTTVRTTPRPTLPPTKPPTRPPTTYLPPPTVRTTRPPPPPTRPPT 750

Query: 510  MPRTRA*RP*PTRSSR 557
             P T    P   R++R
Sbjct: 751  KPPTTYLPPVTVRTTR 766

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 53/182 (29%), Positives = 63/182 (34%), Gaps = 7/182 (3%)
 Frame = +3

Query: 24  PSPSAGPRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSWSSTSS 203
           P P   PR  TP PTR     P+T P        ++  PP ++R                
Sbjct: 314 PPPPPPPR--TPPPTRPPTKPPTTRPPATYLPPTNKPPPPVTTR---------------- 355

Query: 204 TAC*SRPRPPGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVP-----ARCRSRRSPTWALR 368
                RP PP     ++P  PP     P P   P    P+P        R+   PT    
Sbjct: 356 -----RPTPPP----TRPPPPPTRASTPAPTYLPPTNKPLPPVTVRTTVRTTPRPTPPPT 406

Query: 369 SPP--PPT*ASC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACLMPRTRA*RP*P 542
            PP  PPT        LP       RP   P P   PT PP   L    +  TRA  P P
Sbjct: 407 KPPTRPPT------TYLPPPTVRTTRP--PPPPTRPPTKPPTTYLPPVTVRTTRA-TPPP 457

Query: 543 TR 548
           TR
Sbjct: 458 TR 459

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 51/175 (29%), Positives = 61/175 (34%), Gaps = 3/175 (1%)
 Frame = +3

Query: 42  PRRTTPRPTRTSLPSPSTPPAPA*RCRASRATPPRSSRRTCWWARGRSWSSTSSTAC*SR 221
           P RTT  PTR     P+ PP    R      TPP +                      ++
Sbjct: 179 PVRTTQPPTRPPTRPPTRPPT---RPPTRPPTPPPTYLPPT-----------------NK 218

Query: 222 PRPPGRWV*SKPTAPPRPCPRPRPRPRPRRRLPVPARC---RSRRSPTWALRSPPPPT*A 392
           P PP       P  PPR  P  RP  RP    P PA      ++  P    R PPPP   
Sbjct: 219 PLPPVTTRLPPPPPPPRTPPPTRPPTRPPTTRP-PATYLPPTNKPLPPVTTRLPPPPP-- 275

Query: 393 SC*ARLLPRVWATRWRPRTVPSPCLRPTMPPGRRLRACLMPRTRA*RP*PTRSSR 557
                           PRT P P   PT PP  R  A  +P T   +P P  ++R
Sbjct: 276 ---------------SPRT-PPPTRPPTRPPTTRPPATYLPPTN--KPLPPVTTR 312

>gb|AAK77552.1|AF394230_1 LCI5 [Chlamydomonas reinhardtii]
          Length = 321

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 52/154 (33%), Positives = 67/154 (42%), Gaps = 29/154 (18%)
 Frame = +3

Query: 6   TWPCAAPSPSAGPRRTTPR----PTRTSLPSP---------STPPAPA*RCRASRATPPR 146
           +W  AAP+ SA  R ++ +    P+R++LPS          S+ PAPA     S A  P 
Sbjct: 154 SWRDAAPASSAPARSSSSKKAVTPSRSALPSNWKQELESLRSSSPAPA-----SSAPAPA 208

Query: 147 SSRRTCWW-------ARGRSWSSTSSTAC*SRPRPPGRW---V*SKPTAPPRPCPRPRPR 296
            S    W        A  RS S++      SR   P  W   + S  +  P P  RP PR
Sbjct: 209 RSSSASWRDAAPASSAPARSSSASKKAVTPSRSALPSNWKQELESLRSNSPAPARRPLPR 268

Query: 297 PRPRRRLPV------PARCRSRRSPTWALRSPPP 380
           P PRR   V      PAR  +R +PT  L SP P
Sbjct: 269 PAPRRPAGVTPPPRAPARAPTRPAPTPGLASPSP 302

 Score = 40.4 bits (93), Expect = 0.016
 Identities = 59/210 (28%), Positives = 75/210 (35%), Gaps = 29/210 (13%)
 Frame = +3

Query: 6   TWPCAAPSPSAGPRRTTPR-----PTRTSLPSP---------STPPAPA*RCRASRATPP 143
           +W  AAP+ SA  R ++       P+R++LPS          S+ PAPA     S A  P
Sbjct: 93  SWRDAAPASSAPARSSSASKKAVTPSRSALPSNWKQELESLRSSSPAPA-----SSAPAP 147

Query: 144 RSSRRTCWW-------ARGRSWSSTSSTAC*SRPRPPGRW------V*SKPTAPPRPCPR 284
             S    W        A  RS SS+      SR   P  W      + S   AP    P 
Sbjct: 148 ARSSSASWRDAAPASSAPARS-SSSKKAVTPSRSALPSNWKQELESLRSSSPAPASSAPA 206

Query: 285 PRPRPRPRRRLPVPARCRSRRSPTWALRSPPPPT*ASC*ARLLPRVWATRWRP--RTVPS 458
           P        R   PA     RS + + ++  P   A      LP  W           P+
Sbjct: 207 PARSSSASWRDAAPASSAPARSSSASKKAVTPSRSA------LPSNWKQELESLRSNSPA 260

Query: 459 PCLRPTMPPGRRLRACLMPRTRA*RP*PTR 548
           P  RP   P  R  A + P  RA    PTR
Sbjct: 261 PARRPLPRPAPRRPAGVTPPPRAPARAPTR 290

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 35/131 (26%), Positives = 46/131 (34%), Gaps = 5/131 (3%)
 Frame = -2

Query: 488 PRRHCWAQTW*GDCSRSPPGCPDPRQEPCSAAGSGRGWWRSQRPGWGPSRPAPCRYRKTT 309
           P R      W  +        P P     + A S    WR       P+  AP R    +
Sbjct: 177 PSRSALPSNWKQELESLRSSSPAPASSAPAPARSSSASWRDA----APASSAPARSSSAS 232

Query: 308 ARARAWARAWARARWCRWLGSDPAPWRSGS*SARRRRRGRPAP-----ASCPPARPP**P 144
            +A   +R+   + W + L S     RS S +  RR   RPAP      + PP  P   P
Sbjct: 233 KKAVTPSRSALPSNWKQELES----LRSNSPAPARRPLPRPAPRRPAGVTPPPRAPARAP 288

Query: 143 WRSCPGSPTAS 111
            R  P    AS
Sbjct: 289 TRPAPTPGLAS 299



EST assemble image


clone accession position
1 MXL037h03_r BP095200 1 413
2 MXL046h10_r BP095756 57 469
3 MXL063g11_r BP096727 65 516
4 MXL088b03_r BP098146 97 561
5 MXL077g12_r BP097566 131 497




Chlamydomonas reinhardtii
Kazusa DNA Research Institute