KCC003461A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003461A_C01 KCC003461A_c01
cgggagccgtcggtagtagtaggtccggtgtgtggcgggcgagtttggagaaacatcggt
caacacgacaacaggtccacTGCTCTGAATCCCCGTGCCAGCAGTTGTAGCCCCGTCCCT
GCGTTCCCCGGTACGCAACCGGTACGCAGCAACGCGGGAGCAACCTCTCAATTTCTTTTC
GTTCAGGACAACTTTGTTTCTGGAAGGCTTTGCTCAGATCCAGTTGGTATGATCCCCGTA
TAATCTTTCGGTTTGGTCTTGTTGGAGGTGCGCATTGGTAGTAGCCGATAATTGCCGTGT
GTGTACGGGGTCCCGCAGTGCGGTCCTCTCCTAGTCGTATTTCCTAGCGTCCGGACGATG
GTTAAAGCGTCGTAAGGGTGGGGTGTGGCAGAGAGACGGGAAGCGCGAGGGACTTCGGAG
ATGATTGCGTGTCTTGGCAGCACAGCCGCGTCCCATCTGGGTCGTGCCGCTGCTCCGGAC
CTGCACGCAGGAGTGTGCGAAGGTTGGTGAACATGCTTCGGAGTGCTTTCGTGTGGTTGC
GCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003461A_C01 KCC003461A_c01
         (543 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_329724.1| predicted protein [Neurospora crassa] gi|289257...    34  1.1
dbj|BAB70847.1| unnamed protein product [Homo sapiens]                 33  1.9
ref|NP_766363.1| plexin B1 [Mus musculus] gi|24475410|dbj|BAC226...    33  1.9
dbj|BAC97943.1| mKIAA0407 protein [Mus musculus]                       33  1.9
dbj|BAC55639.1| OJ1081_B12.22 [Oryza sativa (japonica cultivar-g...    33  3.2

>ref|XP_329724.1| predicted protein [Neurospora crassa] gi|28925792|gb|EAA34796.1|
            predicted protein [Neurospora crassa]
          Length = 1276

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = -2

Query: 539  QPHESTPKHVHQPSHTPACRSGAAARPRWDAAVLPRHAIISEVPRASRLSATPHPYDALT 360
            +P  +TP      +  P   S    RPRW+A   P         +   L+ TP PY   T
Sbjct: 992  RPGTTTPSSSRSAAQPPRPSSKLDNRPRWNATFSPSDVDTGHNFKPLSLT-TPSPYARST 1050

Query: 359  IVRTLG-NTTRRGPHCGTPYTHGNYRLLP-MRTSNKTKPK 246
               +LG ++T + P   +P THG+    P ++ SN T  K
Sbjct: 1051 --SSLGQSSTSKLPQTRSPLTHGSDVQSPTIKRSNATASK 1088

>dbj|BAB70847.1| unnamed protein product [Homo sapiens]
          Length = 135

 Score = 33.5 bits (75), Expect = 1.9
 Identities = 20/56 (35%), Positives = 30/56 (52%)
 Frame = -1

Query: 180 EKKLRGCSRVAAYRLRTGERRDGATTAGTGIQSSGPVVVLTDVSPNSPATHRTYYY 13
           +++ RG   +A+  +  GE   G  T GTG       V+LTD+SP  P T RT+ +
Sbjct: 65  DRQCRGLELIAS-EVGPGEMGRGWATMGTGSNK----VILTDISPKPPFTLRTFLW 115

>ref|NP_766363.1| plexin B1 [Mus musculus] gi|24475410|dbj|BAC22660.1| plexinB1 [Mus
            musculus]
          Length = 2119

 Score = 33.5 bits (75), Expect = 1.9
 Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 5/71 (7%)
 Frame = -2

Query: 542  AQPHESTPKHVHQP-----SHTPACRSGAAARPRWDAAVLPRHAIISEVPRASRLSATPH 378
            AQ     P+   +P     SH   CR+ A   P WD+ V     + + V   + LS TP 
Sbjct: 1297 AQKQHVVPEKFEEPCLVNSSHLLMCRTPALPGPPWDSGVQVEFILDNMVFDFAALSPTPF 1356

Query: 377  PYDALTIVRTL 345
             Y+A   +R+L
Sbjct: 1357 SYEADPTLRSL 1367

>dbj|BAC97943.1| mKIAA0407 protein [Mus musculus]
          Length = 1207

 Score = 33.5 bits (75), Expect = 1.9
 Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 5/71 (7%)
 Frame = -2

Query: 542 AQPHESTPKHVHQP-----SHTPACRSGAAARPRWDAAVLPRHAIISEVPRASRLSATPH 378
           AQ     P+   +P     SH   CR+ A   P WD+ V     + + V   + LS TP 
Sbjct: 385 AQKQHVVPEKFEEPCLVNSSHLLMCRTPALPGPPWDSGVQVEFILDNMVFDFAALSPTPF 444

Query: 377 PYDALTIVRTL 345
            Y+A   +R+L
Sbjct: 445 SYEADPTLRSL 455

>dbj|BAC55639.1| OJ1081_B12.22 [Oryza sativa (japonica cultivar-group)]
          Length = 1273

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 20/56 (35%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
 Frame = -2

Query: 536  PHESTPKHVHQPSHTPACRSGAAARPRWDAAVLPRHAIISEVPR--ASRLSATPHP 375
            P ++TP+           R+ AAA  R  AA  PRHA  +  P+  A+   ATP P
Sbjct: 1106 PRDATPRRRRATPPPSPLRNAAAACQRHAAAATPRHAAAATAPQRHATTAVATPPP 1161



EST assemble image


clone accession position
1 MXL050g12_r BP096000 1 373
2 MXL030d06_r BP094822 213 543




Chlamydomonas reinhardtii
Kazusa DNA Research Institute